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Gene finding
Gene finding with similarity
Gene finding in Bacteria
Gene finding in Viruses
Next Generation
Gene search
Gene explorer
Protein location
RNA structure
Protein structure
Multiple alignment
Analysis of expression data
Plant promoter database
Search and map repeats
Extracting known SNPs



Seqman help

Seqman allows to perform a set of manipulaions on a sequences: loading, designing of sequences, search for motifs in a sequence and animoacid translations of a sequences. Also seqman allows to save results and print sequence and results in different formats.

Main page description - contains description of seqman main page structure.

Commands description:

       1. The group "sequence constructions" contains commands for loading and designing of sequences:
  • "Load" - loading of sequence.
  • "Cut" - allocation (receiving) or cutting out (deletion) of a fragment from a sequence.
  • "Complement/Reverse" - creating of a complementary/reverse order sequence.
  • "Insert/Change" - insert/replace a fragment of a sequence.
  • "Insert/Unite" - insert/addition of one sequence to another.

       2. The group "searches" contains commands for search of motifs in a sequence:
  • "Restriction sites" - search of restriction sites in a sequence. Searches for restriction sites, which are described in Restriction sites Database.
  • "Sequence search" - search of one sequence in another.
  • "Motif search" - search of motifs in a sequence.
  • "Search for primers" - search for primers in a sequence.
  • "Uniqness" - align of sequence on a genome.

       3. The group "translations" contains commands for aminoacid translation:
  • "AA translation" - aminoacid translation.

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