SpliceDB: canonical and non-canonical splice site sequences in mammalian genes

Burset M., Seledtsov I., Solovyev V. (Nucl.Acids Res.,2000,28,4364-4375; Nucl. Acids Res.,2001,29,255-259)

About DB Format of files

Complete mammals (43337 pairs) database
Complete human (28468 pairs) database

SpliceDB

Mammalian frequency matrices for GT-AG pairs
donor site

   34.08   60.36    9.14    0.00    0.00   52.57   71.26    7.08   15.98
   36.24   12.90    3.27    0.00    0.00    2.82    7.56    5.50   16.46
   18.31   12.48   80.34  100.00    0.00   41.94   11.76   81.35   20.90
   11.38   14.25    7.24    0.00  100.00    2.55    9.29    5.88   46.16

acceptor site

    9.00    8.44    7.51    6.82    7.63    7.98    9.66    9.23    7.57    7.69   23.76    4.21  100.00    0.00   23.86
   31.03   31.04   30.69   29.32   32.60   33.00   37.26   38.56   41.02   35.28   30.92   70.82    0.00    0.00   13.81
   12.50   11.52   10.56   10.35   11.05   11.32   11.25    8.52    6.56    6.37   21.14    0.32    0.00  100.00   51.97
   42.36   44.04   47.04   49.43   47.05   46.28   40.81   42.89   44.54   50.50   24.09   24.61    0.00    0.00   10.37

Mammalian frequency matrices for GC-AG pairs
donor site

   40.48   88.89    1.59    0.00    0.00   87.30   84.13    1.59    7.94
   42.06    0.79    0.79    0.00  100.00    0.00    3.17    0.79   11.90
   15.87    1.59   97.62  100.00    0.00   12.70    6.35   96.83    9.52
    1.59    8.73    0.00    0.00    0.00    0.00    6.35    0.79   70.63

acceptor site

   11.11   12.70    3.17    4.76   12.70    8.73   16.67   16.67   12.70    9.52   26.19    6.35  100.00    0.00   21.43
   36.51   30.95   19.05   23.02   34.92   39.68   34.92   40.48   40.48   36.51   33.33   68.25    0.00    0.00    7.94
    9.52   10.32   15.08   12.70    8.73    9.52   16.67    4.76    2.38    6.35   13.49    0.00    0.00  100.00   62.70
   38.89   41.27   58.73   55.56   42.06   40.48   30.95   37.30   44.44   47.62   26.98   25.40    0.00    0.00    7.94