Proteomics-MSPreprocess - preprocessing steps for the mass-spectrum data

Proteomics-MSPreprocess program performs preprocessing steps for the mass-spectrum data

Example1

Paste input data here:
4000.29 1713 4000.58 1619 4000.87 1586 4001.16 1684 4001.45 1642 4001.74 1569 4002.03 1523 4002.32 1454 4002.6 1654 4002.89 1557 4003.18 1658 4003.47 1501 4003.76 1548 4004.05 1579 4004.34 1542 4004.63 1456 4004.92 1496 4005.21 1560 4005.5 1381 4005.79 1511 4006.08 1610 4006.37 1497 4006.66 1627 4006.95 1638 4007.24 1565 4007.52 1846 4007.81 1630 4008.1 1566 4008.39 1553 4008.68 1630 4008.97 1566 4009.26 1460 4009.55 1627 4009.84 1610 4010.13 1324 4010.42 1798 4010.71 1548 4011 1799 4011.29 1722 4011.58 1577 4011.87 1725 4012.16 1729 4012.45 1511 4012.74 1709 4013.03 1730 4013.32 1659 4013.61 1750 4013.9 1859 4014.19 1742 4014.48 1603 4014.77 1692 4015.05 1674 4015.34 1633 4015.63 1861 4015.92 1770 4016.21 1741 4016.5 1756 4016.79 1759 4017.08 1777 4017.37 1692 4017.66 1740 4017.95 1809 4018.24 1690 4018.53 1714 4018.82 1773 4019.11 1725 4019.4 1783 4019.69 1732 4019.98 1777 4020.27 1822 4020.56 1915 4020.85 1816 4021.14 1776 4021.43 1823 4021.72 1881 4022.01 1820 4022.3 1675 4022.59 1678 4022.88 1610 4023.17 1705 4023.46 1566 4023.75 1740 4024.04 1665 4024.33 1752 4024.62 1646 4024.91 1725 4025.2 1675 4025.49 1565 4025.78 1544 4026.07 1661 4026.36 1670 4026.65 1756 4026.94 1678 4027.23 1637 4027.52 1612 4027.81 1528 4028.1 1667 4028.39 1592 4028.69 1564 4028.98 1554 4029.27 1601 4029.56 1635 4029.85 1725 4030.14 1606 4030.43 1627 4030.72 1648 4031.01 1726 4031.3 1677 4031.59 1775 4031.88 1783 4032.17 1712 4032.46 1880 4032.75 1684 4033.04 1735 4033.33 1774 4033.62 1869 4033.91 1840 4034.2 1754 4034.49 1919 4034.78 1936 4035.07 1877 4035.36 2003 4035.65 1879 4035.94 1964 4036.24 2049 4036.53 1957 4036.82 1956 4037.11 2094 4037.4 2069 4037.69 2040 4037.98 2176 4038.27 2368 4038.56 2167 4038.85 2353 4039.14 2199 4039.43 2280 4039.72 2055 4040.01 2136 4040.3 2356 4040.59 2166 4040.88 1946 4041.18 2071 4041.47 2231 4041.76 2208 4042.05 2295 4042.34 2172 4042.63 2065 4042.92 2181 4043.21 2110 4043.5 2407 4043.79 2306 4044.08 2031 4044.37 2308 4044.66 2291 4044.96 2311 4045.25 2348 4045.54 2242 4045.83 2324 4046.12 2274 4046.41 2193 4046.7 2322 4046.99 2287 4047.28 2237 4047.57 2220 4047.86 2439 4048.16 2421 4048.45 2441 4048.74 2545 4049.03 2505 4049.32 2616 4049.61 2550 4049.9 2662 4050.19 2847 4050.48 2646 4050.77 2854 4051.07 2890 4051.36 3151 4051.65 3365 4051.94 3755 4052.23 3575 4052.52 3916 4052.81 4087 4053.1 4127 4053.39 4476 4053.69 4659 4053.98 4374 4054.27 4678 4054.56 4285 4054.85 4473 4055.14 4280 4055.43 3806 4055.72 4229 4056.02 4134 4056.31 3645 4056.6 3806 4056.89 3589 4057.18 3391 4057.47 3430 4057.76 3221 4058.05 3047 4058.35 3114 4058.64 2937 4058.93 2964 4059.22 2822 4059.51 2666 4059.8 2801 4060.09 2724 4060.38 2620 4060.68 2620 4060.97 2611 4061.26 2419 4061.55 2438 4061.84 2558 4062.13 2433 4062.42 2299 4062.72 2349 4063.01 2441 4063.3 2445 4063.59 2498 4063.88 2390 4064.17 2373 4064.47 2390 4064.76 2275 4065.05 2376 4065.34 2285 4065.63 2291 4065.92 2229 4066.21 2119 4066.51 2142 4066.8 2082 4067.09 2055 4067.38 2079 4067.67 2245 4067.96 2228 4068.26 2180 4068.55 2085 4068.84 2133 4069.13 2113 4069.42 2001 4069.71 2183 4070.01 2075 4070.3 2169 4070.59 2185 4070.88 2286 4071.17 2243 4071.47 2189 4071.76 2187 4072.05 2162 4072.34 2173 4072.63 2113 4072.92 2107 4073.22 2082 4073.51 2123 4073.8 2090 4074.09 2122 4074.38 2291 4074.68 2257 4074.97 2187 4075.26 2092 4075.55 2237 4075.84 2154 4076.14 2155 4076.43 1931 4076.72 2082 4077.01 2166 4077.3 1984 4077.6 2165 4077.89 2091 4078.18 2068 4078.47 1837 4078.76 2023 4079.06 1967 4079.35 1846 4079.64 1888 4079.93 1950 4080.22 1879 4080.52 1883 4080.81 2084 4081.1 1976 4081.39 2057 4081.68 2086 4081.98 1989 4082.27 1833 4082.56 1907 4082.85 1919 4083.15 1914 4083.44 2074 4083.73 1978 4084.02 1998 4084.31 2046 4084.61 1936 4084.9 2108 4085.19 2001 4085.48 2114 4085.78 2111 4086.07 2051 4086.36 2207 4086.65 2194 4086.95 2356 4087.24 2189 4087.53 2270 4087.82 2466 4088.11 2278 4088.41 2436 4088.7 2342 4088.99 2405 4089.28 2713 4089.58 2868 4089.87 3109 4090.16 3220 4090.45 3134 4090.75 3303 4091.04 3177 4091.33 3287 4091.62 3613 4091.92 3555 4092.21 3469 4092.5 3633 4092.79 3309 4093.09 3714 4093.38 3570 4093.67 3254 4093.96 3153 4094.26 3174 4094.55 2985 4094.84 3072 4095.14 2753 4095.43 2764 4095.72 2861 4096.01 2594 4096.31 2541 4096.6 2601 4096.89 2468 4097.18 2390 4097.48 2336 4097.77 2248 4098.06 2378 4098.35 2228 4098.65 2176 4098.94 2130 4099.23 2086 4099.53 1995 4099.82 2036 4100.11 2147 4100.4 1982 4100.7 2084 4100.99 1924 4101.28 2020 4101.58 1966 4101.87 1920 4102.16 2109 4102.45 1874 4102.75 1796 4103.04 1894 4103.33 1941 4103.63 1895 4103.92 1762 4104.21 1688 4104.51 1674 4104.8 1708 4105.09 1718 4105.38 1784 4105.68 1778 4105.97 1746 4106.26 1912 4106.56 1841 4106.85 1725 4107.14 1688 4107.44 1773 4107.73 1587 4108.02 1947 4108.31 1884 4108.61 1674 4108.9 1818 4109.19 1881 4109.49 1845 4109.78 1773 4110.07 1756 4110.37 1923 4110.66 1883 4110.95 1991 4111.25 1948 4111.54 1913 4111.83 1885 4112.13 1886 4112.42 1731 4112.71 1929 4113.01 1817 4113.3 1893 4113.59 1689 4113.89 1840 4114.18 1830 4114.47 1749 4114.77 1969 4115.06 1788 4115.35 1726 4115.65 1820 4115.94 1721 4116.23 1809 4116.53 1747 4116.82 1795 4117.11 1758 4117.41 1775 4117.7 1851 4117.99 1826 4118.29 1806 4118.58 1773 4118.87 1711 4119.17 1740 4119.46 1879 4119.75 1781 4120.05 1713 4120.34 1728 4120.63 1765 4120.93 1874 4121.22 1737 4121.52 1651 4121.81 1782 4122.1 1688 4122.4 1813 4122.69 1803 4122.98 1870 4123.28 1673 4123.57 1761 4123.86 1819 4124.16 1859 4124.45 1961 4124.75 1913 4125.04 1769 4125.33 1835 4125.63 1935 4125.92 1812 4126.21 1931 4126.51 1946 4126.8 1935 4127.1 1890 4127.39 1789 4127.68 1840 4127.98 1814 4128.27 1785 4128.56 1716 4128.86 1722 4129.15 1639 4129.45 1702 4129.74 1663 4130.03 1872 4130.33 1770 4130.62 1875 4130.92 1792 4131.21 1805 4131.5 1790 4131.8 1891 4132.09 1889 4132.39 1786 4132.68 1795 4132.97 1825 4133.27 1815 4133.56 1951 4133.86 1910 4134.15 1828 4134.44 1750 4134.74 1744 4135.03 1766 4135.33 1650 4135.62 1895 4135.91 1887 4136.21 1901 4136.5 1743 4136.8 1743 4137.09 1781 4137.38 1652 4137.68 1646 4137.97 1843 4138.27 1635 4138.56 1813 4138.86 1614 4139.15 1698 4139.44 1607 4139.74 1492 4140.03 1586 4140.33 1550 4140.62 1576 4140.92 1491 4141.21 1474 4141.5 1618 4141.8 1585 4142.09 1657 4142.39 1608 4142.68 1753 4142.98 1712 4143.27 1734 4143.56 1625 4143.86 1567 4144.15 1588 4144.45 1668 4144.74 1582 4145.04 1788 4145.33 1663 4145.62 1722 4145.92 1526 4146.21 1766 4146.51 1635 4146.8 1741 4147.1 1717 4147.39 1638 4147.69 1661 4147.98 1534 4148.28 1617 4148.57 1714 4148.86 1804 4149.16 1773 4149.45 1845 4149.75 1750 4150.04 1803 4150.34 1730 4150.63 1838 4150.93 1927 4151.22 1779 4151.52 1727 4151.81 1796 4152.11 1738 4152.4 1806 4152.69 1699 4152.99 1785 4153.28 1790 4153.58 1832 4153.87 1843 4154.17 1760 4154.46 1605 4154.76 1650 4155.05 1689 4155.35 1737 4155.64 1792 4155.94 1720 4156.23 1659 4156.53 1780 4156.82 1684 4157.12 1745 4157.41 1884 4157.71 1752 4158 1619 4158.3 1649 4158.59 1607 4158.89 1610 4159.18 1542 4159.48 1776 4159.77 1693 4160.07 1680 4160.36 1737 4160.66 1587 4160.95 1770 4161.25 1745 4161.54 1733 4161.84 1766 4162.13 1622 4162.43 1754 4162.72 1764 4163.02 1736 4163.31 1712 4163.61 1869 4163.9 1725 4164.2 1837 4164.49 1900 4164.79 1940 4165.08 1914 4165.38 2146 4165.67 1876 4165.97 2020 4166.26 2063 4166.56 2018 4166.85 1984 4167.15 1939 4167.44 2087 4167.74 2034 4168.03 2028 4168.33 2025 4168.62 1948 4168.92 2036 4169.21 2015 4169.51 2175 4169.8 2129 4170.1 2009 4170.4 1872 4170.69 2013 4170.99 2107 4171.28 1981 4171.58 2027 4171.87 2024 4172.17 1992 4172.46 2057 4172.76 1953 4173.05 1911 4173.35 1937 4173.64 1952 4173.94 1942 4174.24 1841 4174.53 2115 4174.83 1842 4175.12 2046 4175.42 2046 4175.71 1966 4176.01 2082 4176.3 1837 4176.6 1773 4176.9 1726 4177.19 1940 4177.49 1759 4177.78 1774 4178.08 2051 4178.37 2050 4178.67 1826 4178.96 1995 4179.26 2001 4179.56 2066 4179.85 1907 4180.15 1899 4180.44 1825 4180.74 2066 4181.03 1930 4181.33 2027 4181.63 1947 4181.92 1879 4182.22 1926 4182.51 1890 4182.81 1974 4183.1 1983 4183.4 2009 4183.7 2082 4183.99 2051 4184.29 2083 4184.58 2012 4184.88 2144 4185.17 2047 4185.47 2147 4185.77 1887 4186.06 2028 4186.36 2188 4186.65 2032 4186.95 2142 4187.25 2140 4187.54 2183 4187.84 2194 4188.13 2250 4188.43 2278 4188.73 2084 4189.02 2245 4189.32 1924 4189.61 2048 4189.91 2213 4190.21 2255 4190.5 2391 4190.8 2386 4191.09 2363 4191.39 2333 4191.69 2475 4191.98 2552 4192.28 2413 4192.57 2591 4192.87 2478 4193.17 2464 4193.46 2615 4193.76 2534 4194.06 2562 4194.35 2567 4194.65 2692 4194.94 2508 4195.24 2637 4195.54 2567 4195.83 2425 4196.13 2469 4196.42 2544 4196.72 2511 4197.02 2390 4197.31 2612 4197.61 2573 4197.91 2514 4198.2 2471 4198.5 2577 4198.8 2566 4199.09 2602 4199.39 2445 4199.68 2584 4199.98 2618 4200.28 2505 4200.57 2815 4200.87 2627 4201.17 2735 4201.46 2541 4201.76 2620 4202.06 2778 4202.35 2679 4202.65 2582 4202.95 2694 4203.24 2854 4203.54 2983 4203.83 2811 4204.13 3126 4204.43 3187 4204.72 3142 4205.02 3377 4205.32 3449 4205.61 3641 4205.91 3874 4206.21 3834 4206.5 4206 4206.8 4267 4207.1 4556 4207.39 4916 4207.69 5857 4207.99 5827 4208.28 6283 4208.58 6633 4208.88 6955 4209.17 7076 4209.47 7868 4209.77 8121 4210.06 8219 4210.36 8552 4210.66 8613 4210.95 8455 4211.25 8148 4211.55 8071 4211.84 7859 4212.14 7364 4212.44 7212 4212.73 6768 4213.03 6876 4213.33 6093 4213.63 6076 4213.92 5710 4214.22 5278 4214.52 4984 4214.81 4597 4215.11 4357 4215.41 4032 4215.7 4097 4216 4010 4216.3 3606 4216.59 3277 4216.89 3393 4217.19 3541 4217.49 3190 4217.78 2994 4218.08 3092 4218.38 2976 4218.67 2879 4218.97 2868 4219.27 2861 4219.56 2753 4219.86 2757 4220.16 2702 4220.46 2603 4220.75 2414 4221.05 2513 4221.35 2482 4221.64 2461 4221.94 2531 4222.24 2424 4222.54 2362 4222.83 2353 4223.13 2443 4223.43 2477 4223.72 2336 4224.02 2157 4224.32 2191 4224.62 2235 4224.91 2339 4225.21 2135 4225.51 2221 4225.81 2030 4226.1 2080 4226.4 1964 4226.7 2104 4226.99 2058 4227.29 2031 4227.59 1834 4227.89 1867 4228.18 1840 4228.48 1934 4228.78 2037 4229.08 1974 4229.37 1950 4229.67 1859 4229.97 1942 4230.27 1822 4230.56 1954 4230.86 2050 4231.16 2204 4231.46 1900 4231.75 2033 4232.05 2130 4232.35 2146 4232.65 2045 4232.94 2123 4233.24 2191 4233.54 2163 4233.84 2095 4234.13 2280 4234.43 2172 4234.73 2236 4235.03 2244 4235.32 2278 4235.62 2293 4235.92 2344 4236.22 2359 4236.51 2373 4236.81 2258 4237.11 2301 4237.41 2477 4237.71 2411 4238 2469 4238.3 2365 4238.6 2430 4238.9 2438 4239.19 2453 4239.49 2271 4239.79 2468 4240.09 2407 4240.39 2475 4240.68 2361 4240.98 2683 4241.28 2394 4241.58 2365 4241.87 2406 4242.17 2190 4242.47 2297 4242.77 2212 4243.07 2362 4243.36 2272 4243.66 2257 4243.96 2277 4244.26 2235 4244.56 2198 4244.85 2236 4245.15 2272 4245.45 2340 4245.75 2248 4246.05 2247 4246.34 2134 4246.64 2309 4246.94 2437 4247.24 2296 4247.54 2330 4247.83 2369 4248.13 2432 4248.43 2440 4248.73 2350 4249.03 2260 4249.32 2498 4249.62 2493 4249.92 2461 4250.22 2450 4250.52 2546 4250.81 2546 4251.11 2695 4251.41 2582 4251.71 2450 4252.01 2570 4252.31 2664 4252.6 2493 4252.9 2466 4253.2 2343 4253.5 2487 4253.8 2579 4254.1 2595 4254.39 2476 4254.69 2720 4254.99 2459 4255.29 2466 4255.59 2455 4255.89 2338 4256.18 2739 4256.48 2394 4256.78 2397 4257.08 2566 4257.38 2670 4257.68 2508 4257.97 2404 4258.27 2383 4258.57 2537 4258.87 2705 4259.17 2504 4259.47 2510 4259.76 2564 4260.06 2620 4260.36 2575 4260.66 2644 4260.96 2598 4261.26 2683 4261.56 2702 4261.85 2810 4262.15 2790 4262.45 2798 4262.75 3090 4263.05 3144 4263.35 3191 4263.65 3083 4263.94 3090 4264.24 2914 4264.54 3284 4264.84 3571 4265.14 3529 4265.44 3504 4265.74 3395 4266.03 3505 4266.33 3772 4266.63 3764 4266.93 3576 4267.23 3610 4267.53 3688 4267.83 3721 4268.13 3559 4268.42 3699 4268.72 3902 4269.02 3715 4269.32 3657 4269.62 3592 4269.92 3778 4270.22 3638 4270.52 3640 4270.82 3581 4271.11 3535 4271.41 3366 4271.71 3367 4272.01 3342 4272.31 3585 4272.61 3506 4272.91 3549 4273.21 3543 4273.51 3544 4273.8 3533 4274.1 3706 4274.4 3766 4274.7 4064 4275 3796 4275.3 3827 4275.6 4137 4275.9 4180 4276.2 4448 4276.5 4273 4276.8 4230 4277.09 4461 4277.39 4535 4277.69 4852 4277.99 4858 4278.29 5076 4278.59 5344 4278.89 5843 4279.19 6421 4279.49 6791 4279.79 7541 4280.09 8615 4280.38 9116 4280.68 10163 4280.98 11257 4281.28 11666 4281.58 12927 4281.88 13828 4282.18 13653 4282.48 13730 4282.78 14568 4283.08 14223 4283.38 13878 4283.68 13452 4283.98 13222 4284.28 12848 4284.57 12160 4284.87 11176 4285.17 10559 4285.47 10057 4285.77 9482 4286.07 9089 4286.37 8365 4286.67 7567 4286.97 7678 4287.27 6928 4287.57 6392 4287.87 5951 4288.17 5821 4288.47 5760 4288.77 5538 4289.07 5388 4289.37 5059 4289.67 4988 4289.97 4827 4290.26 4379 4290.56 4282 4290.86 4348 4291.16 4129 4291.46 3903 4291.76 3927 4292.06 4103 4292.36 3969 4292.66 3808 4292.96 3729 4293.26 3762 4293.56 3721 4293.86 3591 4294.16 3703 4294.46 3742 4294.76 3570 4295.06 3588 4295.36 3723 4295.66 3845 4295.96 3812 4296.26 3853 4296.56 3681 4296.86 3862 4297.16 4153 4297.46 4183 4297.76 4303 4298.06 4061 4298.36 4190 4298.66 4082 4298.96 4245 4299.26 4030 4299.56 3988 4299.86 3914 4300.16 4160 4300.46 3664 4300.76 3820 4301.06 3534 4301.36 3211 4301.66 3258 4301.96 3368 4302.26 3263 4302.56 3408 4302.86 3078 4303.16 3215 4303.46 3169 4303.76 3206 4304.06 2906 4304.36 2867 4304.66 2929 4304.96 2873 4305.26 2961 4305.56 2849 4305.86 2978 4306.16 2769 4306.46 2757 4306.76 2688 4307.06 2670 4307.36 2704 4307.66 2507 4307.96 2603 4308.26 2516 4308.56 2412 4308.86 2448 4309.16 2377 4309.46 2254 4309.76 2323 4310.06 2236 4310.36 2152 4310.66 2165 4310.96 2150 4311.26 2025 4311.56 2153 4311.86 2160 4312.16 2118 4312.46 2135 4312.76 2015 4313.06 1955 4313.36 1959 4313.66 2004 4313.96 1958 4314.26 1996 4314.56 1923 4314.86 1947 4315.16 1860 4315.46 1786 4315.76 1789 4316.07 1680 4316.37 1702 4316.67 1708 4316.97 1824 4317.27 1761 4317.57 1680 4317.87 1891 4318.17 1839 4318.47 1801 4318.77 1827 4319.07 1861 4319.37 1723 4319.67 1970 4319.97 1866 4320.27 2054 4320.57 2065 4320.87 2068 4321.17 1842 4321.48 1773 4321.78 1798 4322.08 1941 4322.38 1925 4322.68 1993 4322.98 1791 4323.28 1843 4323.58 1805 4323.88 1671 4324.18 1963 4324.48 1960 4324.78 1741 4325.08 1724 4325.38 1856 4325.69 1821 4325.99 1787 4326.29 1929 4326.59 1857 4326.89 1801 4327.19 1802 4327.49 1771 4327.79 1820 4328.09 1792 4328.39 1771 4328.69 1819 4328.99 1841 4329.3 1888 4329.6 1752 4329.9 1615 4330.2 1672 4330.5 1598 4330.8 1665 4331.1 1849 4331.4 1699 4331.7 1677 4332 1585 4332.31 1584 4332.61 1619 4332.91 1642 4333.21 1589 4333.51 1657 4333.81 1710 4334.11 1588 4334.41 1594 4334.71 1527 4335.01 1482 4335.32 1638 4335.62 1612 4335.92 1533 4336.22 1651 4336.52 1609 4336.82 1773 4337.12 1712 4337.42 1638 4337.73 1582 4338.03 1563 4338.33 1569 4338.63 1491 4338.93 1438 4339.23 1582 4339.53 1588 4339.83 1839

Alternatively, load a local file with data:

Local file name:

Input format type:
Binning percent:	(this parameter specify the fraction of data in percent that will remain after resampling)
Smoothing repeats:	(this parameter specify the number of smoothing operation repeats)
Smoothing window size:	(this parameter determine window size for smoothing operation)
Baseline param:	(this parameter specify the minimal relative mass difference, over which the two neighboring peaks 1 and 2 are to be distinguished for baseline determination)
Normalization constant: