Reference: Solovyev VV, Shahmuradov IA. (2003) PromH: Promoters identification using orthologous genomic sequences. Nucleic Acids Res. 31(13):3540-3545.
PROMH(G) / Promoter prediction using orthologous sequences
Paste your nucleotide sequence in here: >H-NPPA/AL021155/[33199:35843/c]/-2000:+645/CDS: 33198/c,premRNA:>33843/c CTGGCAACACCCGGATTCTGGATTCTCCCACCCGTTTGCAGTGCTCCACCCGTTGTATGA CTAAGATGACTTCTTTCCAGTGATAAGGAAATAAAAGGCTTTTGATTTTTCAGCCGTGGA AGAGGTGGGGATGGAGGTGGGCCTGGCTTTCTGTGCCTGTTACTTTTCTTCTCTCTCACT CCTACAGGCTGCTTCTAACCACCCCATGAAATATTAGATCCCCACCTACAGACAAACCCC AAGGCTTGCCAAAGAGGGTCCCTTTTATCTTATCTTAGAATAATATCACCCTGGATACCT CTTGTGACCTCTAGTCACTTGCTGCCCTGATTTCCAACCTTATGGCTGCACAACGTCCTG TTCACCTGGTCAGTCATGAGGTCAGCACACCTGGGGACAGATCTGGCCAGCCAGGACAGA GCTGGTCACTCAACACACATTTTCTGAGCTTCTAAGGAGTGGATTAAAACACATTCGGTG TAGAAATAGATCAGGAGAGCAGCCAACACACACAGACTTGGTAAGTGCACAAAAAAGCTA CAGCCCCAGGGGCATGGGGAAGGTGAAGGAGCTCCCTTGGGGCATCTGAAAGATGGGGAA TGGGGGTTTAATTGGGGAATGCAGCTAAGAGGTAAGGTGGCAGCTCTCTACGTGAAATAG GCTAGGATACAGACATCAGCGTCAGACCTGGGGATCCAGTCCTGGTTCCGCCACTTAGGC ACCTAGTGGCCTTGGGCAAGTGGCATAGCCTCTCGGGCTCAGTTCTGTTCCCTTGTAAGC AAGGACAATGCTATCTACCACCTGGGGATGGTGATCAAAATAAAATCATTTCCATAAAGT TCTCAGCACAGTGCTAGGCATGCTACAAGCAACCAATAAAGACAACTATGATGGCCATCT TGCAGGGACTCAGCACTGCACACTTGTTATGTGTTGACACGTTCTCAGCTCACTTGGGCT CCACAACAATCCTGCAAGGTAGGCAGGGAAGATTTCTACTTTATTCATTCATTTATTTAT TTATTTTTTGAGACCGAGTCCCACTCTGTTGCCCAGGCTAGAGTGCAGTGGTGCGATCTT GGTTCACTACAACCTCCGCCTCCCAAGGTCAAGCAATTCTTTTACCTCAGCCTCCCTAGT AGCGGGGATTACAGGCACATGCCACCACACCCAGCTAATTTTTATATTTTTAGTAGAGAC AGAGTTTTGCCATGTTGGTAGGGCTGGTCTCAAACTCCTGGCCTCAGGTGATCCACCCAC CTTAGCCTCCCAAAGTGCTGGGATTATACGTGTGAGCCACTGCACCCGGCCGGTTTTTAA CATTCTTTCTCATTTTACACACAAGGAAAGTAAGGCTGCGAAGAGGTATGCAACTGGTTT GTTTTGGGCTACAGTACTGGTCTCTCAGCCCTTCAAATTTAGAGTTTTCCCCCAGTATAC GTTGCATTGAATGGTAATGGCTAACACTGAGTTCAGTGCTTAGCAAACAGGCCATTCATT AAACATAGACAGACTTGCTGCCTGTTATTTCCCTTTTGGGGGCCAGGGAAATTGTGACCT TGGTGGCTCGGTCACTTGCCACTTGCCACGTCCTCAGGGAAGGATGTAGAAGGCATTGAG GGAAACTGACTATACCTCCTTCACCCCCACCTCCCTTCCTCCATCGGTCAAGTTGCCACG GGCACAAGCCCAGGAAGGGCAGGGGGATGTTAACAAACTTCAGACACGAAGAGTCTGAGC ATCTATAAACAGCAACGGAAGAAATGAAATTGGCTGCGTCCTCTAAGCCTGTCCCCGCAG CATGCTGGAGGAGGGTCGCGGGGGACATGGAAGAGGAGGAGCTTTGGAGAGAGGATGCTT GTGCTCCCCCGCCTTTTCTTGCTATTTCTATTTGGGGGTTGGATTCCTGGGAGCTTCATC ACATTTGGTTCTCAGCTGACTTTATATACTAAAAAATAACTTCCTTTCGCCTGACCATGG AGAGGGACTGCCAGGGGTGAAGGCAGCCCTGTCTGAGGCCAGAGGTCTGCCCACGTGGCG GATGAGGCAGGTGTGAGGCCAGCTTGAGCATCTGGATCCATTTGTCTCGGGCTGCTGGCT GCCTGCCATTTCCTCCTCTCCACCCTTATTTGGAGGCCCTGACAGCTGAGCCACAAACAA ACCAGGGGAGCTGGGCACCAGCCAAGCGTCACCCTCTGTTTCCCCGCACGGGTACCAGCG TCGAGGAGAAAGAATCCTGAGGCACGGCGGTGAGATAACCAAGGACTCTTTTTTACTCTT CTCACACCTTTGAAGTGGGAGCCTCTTGAGTCAAATCAGTAAGAATGCGGCTCTTGCAGC TGAGGGTCTGGGGGGCTGTTGGGGCTGCCCAAGGCAGAGAGGGGCTGTGACAAGCCCTGC GGGATGATAACTTTAAAAGGGCATCTCCTGCTGGCTTCTCACTTGGCAGCTTTATCACTG CAAGTGACAGAATGGGGAGGGTTCTGTCTCTCCTGCGTGCTTGGAGAGCTGGGGGGCTAT AAAAAGAGGCGGCACTGGGCAGCTGGGAGACAGGGACAGACGTAGGCCAAGAGAGGGGAA CCAGAGAGGAACCAGAGGGGAGAGACAGAGCAGCAAGCAGTGGATTGCTCCTTGACGACG CCAGC
Alternatively, load a local file with sequence in Fasta format: Local file name:
Paste second sequence in here: >R-NPPA/J03267/[1638:3722]/-2000:+85/CDS: 3723, premRNA: 3638 ATCATTTCTAAAGCTCAGGTTGGCTGGCTTCTGAATATCTCAAGAACTATTAGCCCCTCT GCACCCCGAAGCAGAGCAGGCAGGATATGGAGAAACATCACATTGGTTGCCTTCCAATTG CGCTCAAATCAAAGGCTTCTTAGGGACTGAGCTGAGTGTGTGATGGACTCCACCAATTGT CAGACTCAGAGTGTACACGGTGTTGAGCATGGTAGCATTGAGGTATGGAGACGTGCAGAG CATCACAGCAGAGCATCCTTCGCGCGTCCCTCAATGAAACCCTGAGGCCACAGAGTCTCA GTGGATGACATTCATGTCCCCTCCAGTTCCACTCTGGGAAGTTGACTCTAACCAAAGAAG ATGGGCAAACCTTGAAATTGGACCGTAGCTCTCCCAGAGCCACTTATAGACTTCAGATGT GGCTGAGGACAGAAAAGCAGCAACAGTCGATCGAGGTCGCCTACCACAGTCATTCTTCAA GTCTTTGCCTGATTCAAAGACTGTCTCCAGGAGATAGGCCATGTGAAACACACAGCAAGG AGCCTGAGTCCAGTGGGACTGCTCTCTGAGTCCTCTTTGCTAATAATAATCCACAGTCAC ACAATTAGGCAGTAAGCGCGTTCCAGGGACTCATCTGGAGGCGACAGTTTGGACTTGCAC TGACTTCAGATTTCAAGGAGAGAAACCCAAATTGGTCGCCTACCACCCCCAGCTTTCTCA AAGGTTCCCTCCTTCTTCTATCACCACAGACACCTCTTGTGACTTCCAGCCACTTGACAA CCCCACCAGACAGTCTCAGGGTCGGCAGCACTGAGGATGGAAACAGCCGTCCAATACATA AATGCCAGAGGGGACTGATACATGTGGGTATGGAAGTCTTCCAATAGCCCATAGACTGTC GGAAAGGAGAGAGTAAAGACACACACACACACACACACACACACACACACACTTCTCAGA CACACAAAGCATACGTAGTATTTAATATGGCAACATTGAGGTACAGAGACCAATCATTAA AGGTAGACTGCCTGTTTGTGTTCTGAGGATGCCAGAGGAATAGAGGCCTTCACGGATCAC TTCCTTGGTCTCAGAGGTCATGAAGGACATTACAGAGAATGGTGTATGCCCCCTTCAATC CCCACTCCCTCCTCCCTCCGTTTCCCTGGGAAGGTGGGACCACCTCTCGTTTCACACTCA GGGTCTGAGCTTTGGAAAGCAACAGGGCCGAGAAGGAAAAGCGGTTTCATCCTCCAGGCC TGTCTGTCGGGCACCTCGGACACAAGTCGTGGGAGACGGTAAAAATAAGCTTTAGAGGAA ACGTACTCTTCTAACGTCCCTTGGTGTTTACACGTGTAGCAGAATTCTTTAGACCTGTAT CATGTTGGCTTCCTGGCTGACTTCATACTCTAAAAAAATATAATAGCTCTTTCACCTGAC TGCTAACAGGGACATCTAGGGTGGGGGTGGGCTGTCTGGGGCCAGAGGTCCACCCACGAG GCCAATGAATCAGGTGTGAAGGTAACTCCAGTATGCGGGCTCCCCCGCAGCCTAGCTGTC TCCCAGCTGCCTGTATTGCCTCTCCTCCCGCCCTTATTTGGAGCCCCTGACAGCTGAGAT GCAAGCAGAGGGAGCTGGGTGTGGGCCAGCCGTCACCCTCTGCTTCCCTGCATGGGTCCC GTTGCCAGGGAGAAGGAATCCTGAGGCGAGCGCCCAGGAAGATAACCAAGGACTCTTTTC TGCTCTTCTCACACCTTTGAAGTGGGGGCCTCTTGAGGCAAATCATCAAGAATGTGACTC TTGCAGCTGAGGGTCTGGGGGAGGGAGGGTTACTGGAGCTGCTCAAGGCAAAGGGGCTGT GACAAGCTTCGCTGGACTGATAACTTTAAAAGGGCATCTTCTCCTGGCCGCCGCAAGTGA CAGAATGGGGAGGGTTCCAGCTCTCCTGCGTTCTCAGGGAGCTGGGGGGCTATAAAAACG GGAGACGCCGGGCAGCTGGGAGACAGTGACGGACAAAGGCTGAGAGAGAAACCAGAGAGT GAGCCGAGACAGCAAACATCAGATCGTGCCCCGACCCACGCCAGCAT
Alternatively, load a local file with sequence in Fasta format:Local file name:
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Last modification date: 12 Dec 2013