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Total 352 organisms in 17 groupsAscomycetes - Acremonium chrysogenum ( Cephalosporium acremonium )
- Ajellomyces ( generic, Ajellomyces capsulatus+dermatitidis )
- Alternaria brassicicola ( plant pathogen )
- Amorphotheca resinae ( creosote fungus )
- Arthrobotrys oligospora ( mitosporic predatory fungi )
- Arthroderma ( generic, causal agent of dermatophytosis )
- Ascocoryne sarcoides ( jelly drops, purple jellydisc )
- Aureobasidium ( generic, black, yeast-like fungus )
- Baudoinia compniacensis ( Angels' Share fungus )
- Beauveria ( generic, asexually-reproducing fungi )
- Biatriospora mackinnonii ( ascomycetes )
- Bipolaris ( generic )
- Blastomyces ( generic, causal agent of blastomycosis )
- Blumeria graminis ( grass mildew )
- Botryosphaeria obtusa ( plant pathogen that causes Frogeye leaf spot, Black rot and cankers )
- Botryotinia fuckeliana ( plant pathogen, Botrytis cinerea )
- Botrytis ( generic, plant pathogen )
- Brettanomyces bruxellensis( yeast )
- Byssochlamys spectabilis( anamorph Paecilomyces variotii )
- Calycina herbarum ( Hymenoscyphus herbarum )
- Candida albicans ( diploid yeast, human pathogen )
- Candida glabrata ( haploid yeast, human pathogen )
- Capronia( Capronia coronata+epimyces+semiimmersa )
- Ceratocystis platani ( plant pathogen )
- Cercospora canescens ( causes olive leaf spot )
- Chaetomium ( Chaetomium_globosum+thermophilum )
- Chrysoporthe ( generic, Chrysoporthe austroafricana+cubensis+deuterocubensis )
- Ciborinia camelliae ( causal agent of Camellia flower blight )
- Cladophialophora ( Cladophialophora bantiana+carrionii+immunda+psammophila+yegresii )
- Cladosporium sphaerospermum ( mold )
- Claviceps purpurea ( ergot fungus )
- Clavispora lusitaniae ( yeast )
- Coccidioides immitis ( pathogenic fungus )
- Cochliobolus ( generic, Cochliobolus carbonum+heterostrophus+ miyabeanus+ sativus+ victoriae )
- Colletotrichum ( Colletotrichum fioriniae+gloeosporioides+graminicola+higginsianum+orbiculare+sublineola )
- Coniosporium apollinis ( rock-inhabiting microcolonial fungi )
- Cordyceps militaris ( entomopathogenic fungi )
- Corynespora cassiicola ( plant pathogen )
- Cryomyces antarcticus ( ascomycetes )
- Curvularia ( generic, Curvularia lunata+ papendorfii )
- Cyberlindnera ( generic, Cyberlindnera fabianii+ jadinii )
- Diaporthe ampelina ( Phomopsis viticola, Phomopsis ampelina, Fusicoccum viticolum )
- Diplodia seriata ( cause of bot canker of grapevine )
- Emericella ( Aspergillus ) nidulans ( filamentous fungi )
- Emmonsia ( generic, Emmonsia crescens+parva )
- Erysiphe necator ( grape powdery mildew )
- Eutypa armeniacae ( causal agent of Eutypa dieback )
- Exophiala ( Exophiala_aquamarina+dermatitidis+mesophila+oligosperma+sideris+spinifera+xenobiotica )
- Fonsecaea pedrosoi ( major causative agent of chromoblastomycosis )
- Fusarium ( generic, Fusarium graminearum+ fujikuroi+ oxysporum+ solani+ verticillioides )
- Fusarium graminearum ( generic, haploid homothallic ascomycete )
- Gaeumannomyces graminis ( plant pathogen )
- Glarea lozoyensis ( ascomycetes )
- Grosmannia clavigera ( blue stain fungus )
- Hirsutella minnesotensis ( pathogen of the soybean cyst nematode )
- Histoplasma ( generic, dimorphic fungi )
- Histoplasma capsulatum ( cause the histoplasmosis )
- Kazachstania ( yeast, generic )
- Kluyveromyces lactis ( yeast )
- Komagataella pastoris ( methylotrophic yeast, Pichia pastoris )
- Lachancea ( generic )
- Leptosphaeria ( generic, fungi )
- Leptosphaeria maculans ( blackleg of rapeseed fungus )
- Macrophomina phaseolina ( plant pathogen )
- Magnaporthe ( generic, fungi )
- Marssonina brunnea ( plant pathogen )
- Metarhizium ( generic )
- Microsporum gypseum ( soil-associated dermatophyte, Arthroderma gypseum )
- Millerozyma farinosa ( yeast )
- Myceliophthora thermophila ( Sporotrichum thermophilum, Chrysosporium thermophilum )
- Naumovozyma ( generic, Naumovozyma_castellii+dairenensis )
- Neofusicoccum parvum ( Fusicoccum parvum )
- Neosartorya fischeri ( Aspergillus fischeri )
- Neurospora crassa ( red bread mold )
- Oidiodendron maius ( ascomycetes )
- Ophiocordyceps sinensis ( Cordyceps sinensis )
- Ophiostoma piceae ( pine saprophyte )
- Paracoccidioides ( generic, Paracoccidioides_brasiliensis+lutzii )
- Penicillium chrysogenum ( fungus, Penicillium notatum )
- Pestalotiopsis fici ( plant pathogen )
- Pyrenophora ( generic, plant pathogen )
- Saccharomyces cerevisiae ( baker's yeast )
- Scheffersomyces stipitis ( yeast, Pichia stipitis )
- Schizosaccharomyces pombe ( fission yeast )
- Sclerotinia sclerotiorum ( plant pathogen )
- Stagonospora nodorum ( pathogen of wheat )
- Uncinocarpus reesii ( non-pathogenic fungus )
- Yarrowia lipolytica ( yeast )
- Zygosaccharomyces rouxii ( osmoresistant yeast )
Aves (Birds) - Acanthisitta chloris ( Rifleman )
- Anas platyrhynchos ( Mallard )
- Anser cygnoides ( Swan goose, Chinese goose )
- Aptenodytes forsteri ( Emperor penguin )
- Apteryx australis ( Brown kiwi )
- Aquila chrysaetos ( Golden eagle )
- Buceros rhinoceros ( Rhinoceros hornbill )
- Calidris pugnax ( Ruff, Philomachus pugnax )
- Calypte anna ( Anna's hummingbird )
- Caprimulgus carolinensis ( Chuck-will's-widow )
- Cariama cristata ( Red-legged seriema )
- Chaetura pelagica ( Chimney swift )
- Charadrius vociferus ( Killdeer )
- Chicken (Aves generic)
- Chlamydotis macqueenii ( MacQueen's bustard )
- Colius striatus ( Speckled mousebird )
- Columba livia ( Rock pigeon )
- Corvus brachyrhynchos ( American crow )
- Cuculus canorus ( Common cuckoo )
- Egretta garzetta ( Little egret )
- Falco cherrug ( Saker falcon )
- Ficedula albicollis ( collared flycatcher )
- Geospiza fortis ( medium ground finch )
- Haliaeetus leucocephalus ( bald eagle )
- Manacus vitellinus ( golden-collared manakin )
- Meleagris gallopavo ( Wild Turkey )
Basidiomycetes - Agaricus ( generic, champignons )
- Amanita muscaria ( fly agaric, fly amanita )
- Auricularia subglabra ( basidiomycetes )
- Botryobasidium_botryosum ( botryosum )
- Ceriporiopsis subvermispora B ( basidiomycetes )
- Coniophora puteana ( cellar fungus, which causes a rot in wood )
- Coprinus ( generic )
- Cronartium ( generic, Cronartium comandrae+ quercuum+ ribicola 206 genes only )
- Cryptococcus ( generic, encapsulated yeast )
- Cryptococcus gattii ( encapsulated yeast )
- Cryptococcus neoformans ( encapsulated yeast )
- Cylindrobasidium torrendii ( corticioid fungi )
- Fibroporia radiculosa ( Antrodia radiculosa )
- Fistulina hepatica ( beefsteak polypore or ox tongue )
- Fomitiporia mediterranea ( plant pathogen )
- Fomitopsis pinicola ( pine bolete, pinewood king bolete)
- Galerina marginata ( poisonous fungus )
- Gloeophyllum trabeum ( plant fungal pathogen )
- Gymnopus luxurians ( fungus )
- Hebeloma cylindrosporum ( mushroom-forming fungus )
- Heterobasidion irregulare ( tree root rotting pathogenic fungus )
- Hydnomerulius pinastri ( spiny dry rot fungus )
- Hypholoma sublateritium ( brick cap )
- Jaapia argillacea ( fungus )
- Laccaria ( generic )
- Melampsora larici-populina ( poplar leaf rust fungus )
- Microbotryum violaceum ( anther smut fungus, Ustilago violacea )
- Mixia osmundae ( Taphrina osmundae )
- Moniliophthora ( generic, Moniliophthora perniciosa+roreri )
- Paxillus ( generic, Paxillus_involutus+rubicundulus )
- Phanerochaete chrysosporium ( New version USTILAGO+WREST )
- Puccinia ( rusts )
- Ustilago ( smuts )
Dicot plants - Amborella trichopoda ( rare understory shrub )
- Arabidopsis thaliana( rockcress, thale cress )
- Brassica rapa ( turnip, field mustard )
- Camelina sativa ( false flax, gold-of-pleasure )
- Cicer arietinum ( chickpea )
- Citrus sinensis ( sweet orange )
- Cucumis melo ( muskmelon )
- Dicot plants, Arabidopsis ( generic )
- Erythranthe guttata ( spotted monkey flower )
- Eucalyptis grandis ( rose gum )
- Fragaria vesca ( wild strawberry )
- Glycine max ( soybean )
- Gossypium raimondii ( diploid cotton )
- Hevea ( generic )
- Ipomoea batatas ( sweet potato )
- Jatropha curcas ( Barbados nut, purging nut, physic nut, JCL )
- Malus domestica ( apple )
- Medicago ( generic )
- Medicago truncatula ( barrel medic, leguminous )
- Nelumbo nucifera ( sacred lotus, padma, Indian lotus )
- Nicotiana ( generic )
- Populus trichocarpa ( poplar, black cottonwood )
- Solanum lycopersicum ( generic, tomato )
- Sunflower ( generic )
- Vitis vinifera ( wine grape )
Hexapoda (Insecta) - Acromyrmex echinatior ( Panamanian leaf-cutter ant )
- Acyrthosiphon pisum ( pea aphid )
- Aedes aegypti ( yellow fever mosquito )
- Anopheles gambiae ( malaria mosquito )
- Apis (generic, apis )
- Apis dorsata ( giant honey bee )
- Apis florea ( red dwarf honey bee )
- Athalia rosae ( turnip sawfly )
- Atta cephalotes ( leaf cutting ant )
- Bactrocera cucurbitae ( melon fly )
- Bactrocera dorsalis ( oriental fruit fly )
- Bombus impatiens ( common eastern bumble bee )
- Bombus terrestris ( buff-tailed bumble bee )
- Bombyx mori ( silkworm )
- Cerataphis brasiliensis ( Palm Aphid )
- Culex ( generic, culex )
- Danaus plexippus ( butterfly )
- Drosophila (generic, fruit fly)
- Heliconius melpomene ( postman butterfly )
- Nasonia vitripennis ( parasitoid wasp )
- Pediculus humanus ( human louse )
- Tribolium castaneum ( red flour beetle )
Mammalia - Acinonyx jubatus ( Cheetah )
- Ailuropoda melanoleuca ( Giant panda )
- Aotus nancymaae ( Ma's night monkey, Aotus nancymai )
- Apodemus sylvaticus ( wood mouse )
- Balaena mysticetus ( bowhead whale )
- Balaenoptera acutorostrata ( common minke whale or northern minke whale )
- Bison bison ( American bison )
- Bos mutus ( wild yak )
- Bos taurus ( cattle )
- Bubalus bubalis ( Water buffalo )
- Callitrix jacchus ( White-tufted-ear marmoset )
- Camelus dromedarius ( Bactrian camel )
- Canis lupus ( gray wolf )
- Capra hircus ( Goat )
- Ceratotherium simum ( White rhinoceros )
- Cerocebus atys ( Sooty mangabey )
- Chinchilla lanigera ( Long-tailed chinchilla )
- Chlorocebus sabaeus ( Green monkey )
- Choloepus hoffmanni ( Hoffmann's two-fingered sloth )
- Chrysochloris asiatica ( Cape golden mole )
- Colobus angolensis ( Angolan colobus )
- Condylura cristata ( Star-nosed mole )
- Cricetulus griseus ( Chinese hamster )
- Dasypus novemcinctus ( Nine-banded armadillo )
- Dipodomys ordii ( Kangaroo rat )
- Elephantulus edwardii ( Cape long-eared elephant shrew )
- Eptesicus fuscus ( Big brown bat )
- Erinaceus europaeus ( hedgehog )
- Felis catus ( domestic cat )
- Fox ( Fox generic )
- Fukomys damarensis ( Damaraland mole-rat, Damara mole rat, Damaraland blesmol )
- Galeopterus variegatus ( Sunda flying lemur, Malayan flying lemur, Sunda Colugo or Malayan colugo )
- Gorilla gorilla ( Western gorilla )
- Heterocephalus glaber ( naked mole-rat, sand puppy, desert mole rat )
- Human ( Homo sapiens )
- Ictidomys tridecemlineatus ( thirteen-lined ground squirrel,striped gopher )
- Jaculus jaculus ( lesser Egyptian jerboa )
- Leptonychotes weddellii ( Weddell seal )
- Lipotes vexillifer ( baiji, Chinese river dolphin )
- Lynx pardinus ( Iberian lynx )
- Macaca mulatta (Rhesus monkey)
- Mandrillus leucophaeus ( drill )
- Manis pentadactyla ( Chinese pangolin )
- Marmota marmota ( alpine marmot )
- Monodelphis domestica ( gray short-tailed opossum )
- Mouse (generic)
- Mustela putorius ( European Polecat )
- Myotis lucifugus ( Little brown bat )
- Nomascus leucogenys ( gibbon )
- Ochotona princeps ( American pika )
- Ornithorhynchus anatinus ( Platypus )
- Oryctolagus cuniculus ( European rabbit )
- Otolemur_garnettii ( Northern greater galago, small-eared galago )
- Pan troglodytes ( Common chimpanzee )
- Procavia capensis ( Rock hyrax )
- Pteropus vampyrus ( Large flying fox )
- Sarcophilus harrisii ( Tasmanian devil )
- Sorex araneus ( Common shrew )
- Vicugna pacos ( alpaca )
Monocot plants - Aegilops tauschii ( Tausch's goatgrass )
- Brachypodium distachyon ( purple false brome )
- Hordeum vulgare ( barley )
- Leersia perrieri ( cutgrasses )
- Monocot plants ( generic, Corn, Rice, Wheat, Barley )
- Musa acuminata ( dwarf banana )
- Oryza sativa Indica Group(long-grained rice )
- Setaria italica Foxtail millet)
- Sorghum bicolor (Sorghum)
- Triticum aestivum ( wheat )
- Zea mays ( sweetcorn )
Nematoda - Brugia malayi ( parasitic nematode )
- Caenorhabditis brenneri
- Caenorhabditis elegans ( C.elegans )
- Pristionchus pacificus ( nematode )
- Trichinella spiralis ( parasitic nematode )
Oomycetes - Albugo laibachii ( plant pathogen )
- Aphanomyces ( water moulds )
- Hyaloperonospora arabidopsidis ( plant pathogen )
- Phytophthora ( plant pathogen )
- Pythium ultimum ( plant pathogen )
Other animalia - Amphimedon queenslandica ( sponge )
- Aplysia californica ( california sea hare )
- Mnemiopsis leidyi ( warty comb jelly )
- Nematostella vectensis ( sea anemone )
- Schistosoma mansoni ( parasitic trematode )
- Trichoplax adhaerens (placozoans)
Other arthropoda - Daphnia pulex ( water flea )
- Ixodes scapularis ( deer tick )
- Strigamia maritima ( centipede )
Other deuterostomia - Branchiostoma floridae ( lancelet )
- Strongylocentrotus purpuratus ( sea urchin )
- Strongylocentrotus purpuratus (additional variant) ( sea urchin )
Other fungi - Absidia idahoensis ( pathogenic fungus )
- Allomyces macrogynus ( blastocladiomycetes )
- Apophysomyces ( generic, Apophysomyces elegans+trapeziformis )
- Batrachochytrium ( amphibian chytrid fungus )
- Cokeromyces recurvatus ( pathogenic fungus )
- Lichtheimia corymbifera ( Absidia corymbifera, pathogenic fungus )
- Mortierella verticillata ( soil fungi )
- Mucor ( generic, Mucor ambiguus+circinelloides )
- Nosema ( generic, Nosema_apis+bombycis+ceranae, microsporidians )
- Parasitella parasitica ( Parasitella simplex )
- Rhizopus oryzae ( opportunistic human pathogen )
- Rhodosporidium toruloides ( oleaginous yeast )
Other plants - Aureococcus anophagefferens ( heterokont alga )
- Ostreococcus lucimarinus ( green algae )
- Phaeodactylum tricornutum ( Diatoms )
- Physcomitrella patens ( Bryophyte, mosses )
- Selaginella moellendorffii ( Lycophyte, Club-mosses )
Other vertebrata - Alligator mississippiensis ( American alligator )
- Alligator sinensis ( Chinese alligator )
- Anolis carolinensis ( Green anole, Carolina anole )
- Chelonia mydas ( Green sea turtle )
- Chrysemus picta ( Painted turtle )
- Xenopus ( generic, frog )
Pisces (fishes) - Amphilophus citrinellus ( Midas cichlid, red devil cichlid )
- Anguilla anguilla ( European eel, 109 genes )
- Anoplopoma fimbria ( sablefish )
- Astyanax mexicanus ( Mexican tetra or blind cave fish )
- Austrofundulus_limnaeus ( bony fishes )
- Boleophthalmus pectinirostris ( great blue-spotted mudskipper, 122 genes )
- Callorhinchus milii ( Elephant shark )
- Clupea harengus ( Atlantic herring )
- Cottus rhenanus ( small benthic Rhine sculpin )
- Ctenopharyngodon idella ( grass carp )
- Cynoglossus semilaevis ( Tonguefish )
- Cyprinodon ( Cyprinodon_nevadensis+variega )
- Cyprinus carpio ( mirror carp, common carp )
- Danio rerio ( Zebrafish, additional variant )
- Danio rerio ( Zebrafish, leopard danio )
- Dicentrarchus labrax ( European seabass )
- Esox lucius ( northern pike )
- Fundulus heteroclitus ( Mummichog , killifish )
- Gasterosteus aculeatus ( Three-spined stickleback )
- Haplochromis burtoni ( Burton's mouthbrooder )
- Larimichthys crocea ( large yellow croaker )
- Lepisosteus oculatus ( spotted gar )
- Neolamprologus brichardi ( Lyretail cichlid, Princess of Burundi )
- Notothenia coriiceps ( yellowbelly rockcod, black rockcod )
- Oncorhynchus mykiss ( rainbow trout )
- Oreochromis niloticus ( African cichlid )
- Oryzias Latipes ( Japanese rice fish )
- Petromyzon marinus ( Sea lamprey )
- Takifugu rubripes ( Torafugu )
- Tetraodon nigroviridis ( Spotted green pufferfish )
Protista - Acanthamoeba castellanii ( amoebae )
- Babesia ( generic, piroplasms )
- Chlamydomonas ( Chlamydomonas generic)
- Dictyostelium discoideum ( cellular slime molds )
- Entamoeba histolytica ( anaerobic parasitic protozoan )
- Giardia lamblia ( diplomonads, Giardia lamblia )
- Guillardia theta ( cryptomonads )
- Leishmania major ( kinetoplastids )
- Paulinella chromatophora ( cercozoans, freshwater amoeboids )
- Plasmodium falciparum ( malaria parasite )
- Toxoplasma gondii ( apicomplexans )
- Trypanosoma brucei ( kinetoplastids )
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