Total 352 organisms in 17 groups

Ascomycetes

• Acremonium chrysogenum ( Cephalosporium acremonium )
• Ajellomyces ( generic, Ajellomyces capsulatus+dermatitidis )
• Alternaria brassicicola ( plant pathogen )
• Amorphotheca resinae ( creosote fungus )
• Arthrobotrys oligospora ( mitosporic predatory fungi )
• Arthroderma ( generic, causal agent of dermatophytosis )
• Ascocoryne sarcoides ( jelly drops, purple jellydisc )
• Aureobasidium ( generic, black, yeast-like fungus )
• Baudoinia compniacensis ( Angels' Share fungus )
• Beauveria ( generic, asexually-reproducing fungi )
• Biatriospora mackinnonii ( ascomycetes )
• Bipolaris ( generic )
• Blastomyces ( generic, causal agent of blastomycosis )
• Blumeria graminis ( grass mildew )
• Botryosphaeria obtusa ( plant pathogen that causes Frogeye leaf spot, Black rot and cankers )
• Botryotinia fuckeliana ( plant pathogen, Botrytis cinerea )
• Botrytis ( generic, plant pathogen )
• Brettanomyces bruxellensis( yeast )
• Byssochlamys spectabilis( anamorph Paecilomyces variotii )
• Calycina herbarum ( Hymenoscyphus herbarum )
• Candida albicans ( diploid yeast, human pathogen )
• Candida glabrata ( haploid yeast, human pathogen )
• Capronia( Capronia coronata+epimyces+semiimmersa )
• Ceratocystis platani ( plant pathogen )
• Cercospora canescens ( causes olive leaf spot )
• Chaetomium ( Chaetomium_globosum+thermophilum )
• Chrysoporthe ( generic, Chrysoporthe austroafricana+cubensis+deuterocubensis )
• Ciborinia camelliae ( causal agent of Camellia flower blight )
• Cladophialophora ( Cladophialophora bantiana+carrionii+immunda+psammophila+yegresii )
• Cladosporium sphaerospermum ( mold )
• Claviceps purpurea ( ergot fungus )
• Clavispora lusitaniae ( yeast )
• Coccidioides immitis ( pathogenic fungus )
• Cochliobolus ( generic, Cochliobolus carbonum+heterostrophus+ miyabeanus+ sativus+ victoriae )
• Colletotrichum ( Colletotrichum fioriniae+gloeosporioides+graminicola+higginsianum+orbiculare+sublineola )
• Coniosporium apollinis ( rock-inhabiting microcolonial fungi )
• Cordyceps militaris ( entomopathogenic fungi )
• Corynespora cassiicola ( plant pathogen )
• Cryomyces antarcticus ( ascomycetes )
• Curvularia ( generic, Curvularia lunata+ papendorfii )
• Cyberlindnera ( generic, Cyberlindnera fabianii+ jadinii )
• Diaporthe ampelina ( Phomopsis viticola, Phomopsis ampelina, Fusicoccum viticolum )
• Diplodia seriata ( cause of bot canker of grapevine )
• Emericella ( Aspergillus ) nidulans ( filamentous fungi )
• Emmonsia ( generic, Emmonsia crescens+parva )
• Erysiphe necator ( grape powdery mildew )
• Eutypa armeniacae ( causal agent of Eutypa dieback )
• Exophiala ( Exophiala_aquamarina+dermatitidis+mesophila+oligosperma+sideris+spinifera+xenobiotica )
• Fonsecaea pedrosoi ( major causative agent of chromoblastomycosis )
• Fusarium ( generic, Fusarium graminearum+ fujikuroi+ oxysporum+ solani+ verticillioides )
• Fusarium graminearum ( generic, haploid homothallic ascomycete )
• Gaeumannomyces graminis ( plant pathogen )
• Glarea lozoyensis ( ascomycetes )
• Grosmannia clavigera ( blue stain fungus )
• Hirsutella minnesotensis ( pathogen of the soybean cyst nematode )
• Histoplasma ( generic, dimorphic fungi )
• Histoplasma capsulatum ( cause the histoplasmosis )
• Kazachstania ( yeast, generic )
• Kluyveromyces lactis ( yeast )
• Komagataella pastoris ( methylotrophic yeast, Pichia pastoris )
• Lachancea ( generic )
• Leptosphaeria ( generic, fungi )
• Leptosphaeria maculans ( blackleg of rapeseed fungus )
• Macrophomina phaseolina ( plant pathogen )
• Magnaporthe ( generic, fungi )
• Marssonina brunnea ( plant pathogen )
• Metarhizium ( generic )
• Microsporum gypseum ( soil-associated dermatophyte, Arthroderma gypseum )
• Millerozyma farinosa ( yeast )
• Myceliophthora thermophila ( Sporotrichum thermophilum, Chrysosporium thermophilum )
• Naumovozyma ( generic, Naumovozyma_castellii+dairenensis )
• Neofusicoccum parvum ( Fusicoccum parvum )
• Neosartorya fischeri ( Aspergillus fischeri )
• Neurospora crassa ( red bread mold )
• Oidiodendron maius ( ascomycetes )
• Ophiocordyceps sinensis ( Cordyceps sinensis )
• Ophiostoma piceae ( pine saprophyte )
• Paracoccidioides ( generic, Paracoccidioides_brasiliensis+lutzii )
• Penicillium chrysogenum ( fungus, Penicillium notatum )
• Pestalotiopsis fici ( plant pathogen )
• Pyrenophora ( generic, plant pathogen )
• Saccharomyces cerevisiae ( baker's yeast )
• Scheffersomyces stipitis ( yeast, Pichia stipitis )
• Schizosaccharomyces pombe ( fission yeast )
• Sclerotinia sclerotiorum ( plant pathogen )
• Stagonospora nodorum ( pathogen of wheat )
• Uncinocarpus reesii ( non-pathogenic fungus )
• Yarrowia lipolytica ( yeast )
• Zygosaccharomyces rouxii ( osmoresistant yeast )

Aves (Birds)

• Acanthisitta chloris ( Rifleman )
• Anas platyrhynchos ( Mallard )
• Anser cygnoides ( Swan goose, Chinese goose )
• Aptenodytes forsteri ( Emperor penguin )
• Apteryx australis ( Brown kiwi )
• Aquila chrysaetos ( Golden eagle )
• Buceros rhinoceros ( Rhinoceros hornbill )
• Calidris pugnax ( Ruff, Philomachus pugnax )
• Calypte anna ( Anna's hummingbird )
• Caprimulgus carolinensis ( Chuck-will's-widow )
• Cariama cristata ( Red-legged seriema )
• Chaetura pelagica ( Chimney swift )
• Charadrius vociferus ( Killdeer )
• Chicken (Aves generic)
• Chlamydotis macqueenii ( MacQueen's bustard )
• Colius striatus ( Speckled mousebird )
• Columba livia ( Rock pigeon )
• Corvus brachyrhynchos ( American crow )
• Cuculus canorus ( Common cuckoo )
• Egretta garzetta ( Little egret )
• Falco cherrug ( Saker falcon )
• Ficedula albicollis ( collared flycatcher )
• Geospiza fortis ( medium ground finch )
• Haliaeetus leucocephalus ( bald eagle )
• Manacus vitellinus ( golden-collared manakin )
• Meleagris gallopavo ( Wild Turkey )

Basidiomycetes

• Agaricus ( generic, champignons )
• Amanita muscaria ( fly agaric, fly amanita )
• Auricularia subglabra ( basidiomycetes )
• Botryobasidium_botryosum ( botryosum )
• Ceriporiopsis subvermispora B ( basidiomycetes )
• Coniophora puteana ( cellar fungus, which causes a rot in wood )
• Coprinus ( generic )
• Cronartium ( generic, Cronartium comandrae+ quercuum+ ribicola 206 genes only )
• Cryptococcus ( generic, encapsulated yeast )
• Cryptococcus gattii ( encapsulated yeast )
• Cryptococcus neoformans ( encapsulated yeast )
• Cylindrobasidium torrendii ( corticioid fungi )
• Fibroporia radiculosa ( Antrodia radiculosa )
• Fistulina hepatica ( beefsteak polypore or ox tongue )
• Fomitiporia mediterranea ( plant pathogen )
• Fomitopsis pinicola ( pine bolete, pinewood king bolete)
• Galerina marginata ( poisonous fungus )
• Gloeophyllum trabeum ( plant fungal pathogen )
• Gymnopus luxurians ( fungus )
• Hebeloma cylindrosporum ( mushroom-forming fungus )
• Heterobasidion irregulare ( tree root rotting pathogenic fungus )
• Hydnomerulius pinastri ( spiny dry rot fungus )
• Hypholoma sublateritium ( brick cap )
• Jaapia argillacea ( fungus )
• Laccaria ( generic )
• Melampsora larici-populina ( poplar leaf rust fungus )
• Microbotryum violaceum ( anther smut fungus, Ustilago violacea )
• Mixia osmundae ( Taphrina osmundae )
• Moniliophthora ( generic, Moniliophthora perniciosa+roreri )
• Paxillus ( generic, Paxillus_involutus+rubicundulus )
• Phanerochaete chrysosporium ( New version USTILAGO+WREST )
• Puccinia ( rusts )
• Ustilago ( smuts )

Dicot plants

• Amborella trichopoda ( rare understory shrub )
• Arabidopsis thaliana( rockcress, thale cress )
• Brassica rapa ( turnip, field mustard )
• Camelina sativa ( false flax, gold-of-pleasure )
• Cicer arietinum ( chickpea )
• Citrus sinensis ( sweet orange )
• Cucumis melo ( muskmelon )
• Dicot plants, Arabidopsis ( generic )
• Erythranthe guttata ( spotted monkey flower )
• Eucalyptis grandis ( rose gum )
• Fragaria vesca ( wild strawberry )
• Glycine max ( soybean )
• Gossypium raimondii ( diploid cotton )
• Hevea ( generic )
• Ipomoea batatas ( sweet potato )
• Jatropha curcas ( Barbados nut, purging nut, physic nut, JCL )
• Malus domestica ( apple )
• Medicago ( generic )
• Medicago truncatula ( barrel medic, leguminous )
• Nelumbo nucifera ( sacred lotus, padma, Indian lotus )
• Nicotiana ( generic )
• Populus trichocarpa ( poplar, black cottonwood )
• Solanum lycopersicum ( generic, tomato )
• Sunflower ( generic )
• Vitis vinifera ( wine grape )

Hexapoda (Insecta)

• Acromyrmex echinatior ( Panamanian leaf-cutter ant )
• Acyrthosiphon pisum ( pea aphid )
• Aedes aegypti ( yellow fever mosquito )
• Anopheles gambiae ( malaria mosquito )
• Apis (generic, apis )
• Apis dorsata ( giant honey bee )
• Apis florea ( red dwarf honey bee )
• Athalia rosae ( turnip sawfly )
• Atta cephalotes ( leaf cutting ant )
• Bactrocera cucurbitae ( melon fly )
• Bactrocera dorsalis ( oriental fruit fly )
• Bombus impatiens ( common eastern bumble bee )
• Bombus terrestris ( buff-tailed bumble bee )
• Bombyx mori ( silkworm )
• Cerataphis brasiliensis ( Palm Aphid )
• Culex ( generic, culex )
• Danaus plexippus ( butterfly )
• Drosophila (generic, fruit fly)
• Heliconius melpomene ( postman butterfly )
• Nasonia vitripennis ( parasitoid wasp )
• Pediculus humanus ( human louse )
• Tribolium castaneum ( red flour beetle )

Mammalia

• Acinonyx jubatus ( Cheetah )
• Ailuropoda melanoleuca ( Giant panda )
• Aotus nancymaae ( Ma's night monkey, Aotus nancymai )
• Apodemus sylvaticus ( wood mouse )
• Balaena mysticetus ( bowhead whale )
• Balaenoptera acutorostrata ( common minke whale or northern minke whale )
• Bison bison ( American bison )
• Bos mutus ( wild yak )
• Bos taurus ( cattle )
• Bubalus bubalis ( Water buffalo )
• Callitrix jacchus ( White-tufted-ear marmoset )
• Camelus dromedarius ( Bactrian camel )
• Canis lupus ( gray wolf )
• Capra hircus ( Goat )
• Ceratotherium simum ( White rhinoceros )
• Cerocebus atys ( Sooty mangabey )
• Chinchilla lanigera ( Long-tailed chinchilla )
• Chlorocebus sabaeus ( Green monkey )
• Choloepus hoffmanni ( Hoffmann's two-fingered sloth )
• Chrysochloris asiatica ( Cape golden mole )
• Colobus angolensis ( Angolan colobus )
• Condylura cristata ( Star-nosed mole )
• Cricetulus griseus ( Chinese hamster )
• Dasypus novemcinctus ( Nine-banded armadillo )
• Dipodomys ordii ( Kangaroo rat )
• Elephantulus edwardii ( Cape long-eared elephant shrew )
• Eptesicus fuscus ( Big brown bat )
• Erinaceus europaeus ( hedgehog )
• Felis catus ( domestic cat )
• Fox ( Fox generic )
• Fukomys damarensis ( Damaraland mole-rat, Damara mole rat, Damaraland blesmol )
• Galeopterus variegatus ( Sunda flying lemur, Malayan flying lemur, Sunda Colugo or Malayan colugo )
• Gorilla gorilla ( Western gorilla )
• Heterocephalus glaber ( naked mole-rat, sand puppy, desert mole rat )
• Human ( Homo sapiens )
• Ictidomys tridecemlineatus ( thirteen-lined ground squirrel,striped gopher )
• Jaculus jaculus ( lesser Egyptian jerboa )
• Leptonychotes weddellii ( Weddell seal )
• Lipotes vexillifer ( baiji, Chinese river dolphin )
• Lynx pardinus ( Iberian lynx )
• Macaca mulatta (Rhesus monkey)
• Mandrillus leucophaeus ( drill )
• Manis pentadactyla ( Chinese pangolin )
• Marmota marmota ( alpine marmot )
• Monodelphis domestica ( gray short-tailed opossum )
• Mouse (generic)
• Mustela putorius ( European Polecat )
• Myotis lucifugus ( Little brown bat )
• Nomascus leucogenys ( gibbon )
• Ochotona princeps ( American pika )
• Ornithorhynchus anatinus ( Platypus )
• Oryctolagus cuniculus ( European rabbit )
• Otolemur_garnettii ( Northern greater galago, small-eared galago )
• Pan troglodytes ( Common chimpanzee )
• Procavia capensis ( Rock hyrax )
• Pteropus vampyrus ( Large flying fox )
• Sarcophilus harrisii ( Tasmanian devil )
• Sorex araneus ( Common shrew )
• Vicugna pacos ( alpaca )

Monocot plants

• Aegilops tauschii ( Tausch's goatgrass )
• Brachypodium distachyon ( purple false brome )
• Hordeum vulgare ( barley )
• Leersia perrieri ( cutgrasses )
• Monocot plants ( generic, Corn, Rice, Wheat, Barley )
• Musa acuminata ( dwarf banana )
• Oryza sativa Indica Group(long-grained rice )
• Setaria italica Foxtail millet)
• Sorghum bicolor (Sorghum)
• Triticum aestivum ( wheat )
• Zea mays ( sweetcorn )

Nematoda

• Brugia malayi ( parasitic nematode )
• Caenorhabditis brenneri
• Caenorhabditis elegans ( C.elegans )
• Pristionchus pacificus ( nematode )
• Trichinella spiralis ( parasitic nematode )

Oomycetes

• Albugo laibachii ( plant pathogen )
• Aphanomyces ( water moulds )
• Hyaloperonospora arabidopsidis ( plant pathogen )
• Phytophthora ( plant pathogen )
• Pythium ultimum ( plant pathogen )

Other animalia

• Amphimedon queenslandica ( sponge )
• Aplysia californica ( california sea hare )
• Mnemiopsis leidyi ( warty comb jelly )
• Nematostella vectensis ( sea anemone )
• Schistosoma mansoni ( parasitic trematode )
• Trichoplax adhaerens (placozoans)

Other arthropoda

• Daphnia pulex ( water flea )
• Ixodes scapularis ( deer tick )
• Strigamia maritima ( centipede )

Other deuterostomia

• Branchiostoma floridae ( lancelet )
• Strongylocentrotus purpuratus ( sea urchin )
• Strongylocentrotus purpuratus (additional variant) ( sea urchin )

Other fungi

• Absidia idahoensis ( pathogenic fungus )
• Allomyces macrogynus ( blastocladiomycetes )
• Apophysomyces ( generic, Apophysomyces elegans+trapeziformis )
• Batrachochytrium ( amphibian chytrid fungus )
• Cokeromyces recurvatus ( pathogenic fungus )
• Lichtheimia corymbifera ( Absidia corymbifera, pathogenic fungus )
• Mortierella verticillata ( soil fungi )
• Mucor ( generic, Mucor ambiguus+circinelloides )
• Nosema ( generic, Nosema_apis+bombycis+ceranae, microsporidians )
• Parasitella parasitica ( Parasitella simplex )
• Rhizopus oryzae ( opportunistic human pathogen )
• Rhodosporidium toruloides ( oleaginous yeast )

Other plants

• Aureococcus anophagefferens ( heterokont alga )
• Ostreococcus lucimarinus ( green algae )
• Phaeodactylum tricornutum ( Diatoms )
• Physcomitrella patens ( Bryophyte, mosses )
• Selaginella moellendorffii ( Lycophyte, Club-mosses )

Other vertebrata

• Alligator mississippiensis ( American alligator )
• Alligator sinensis ( Chinese alligator )
• Anolis carolinensis ( Green anole, Carolina anole )
• Chelonia mydas ( Green sea turtle )
• Chrysemus picta ( Painted turtle )
• Xenopus ( generic, frog )

Pisces (fishes)

• Amphilophus citrinellus ( Midas cichlid, red devil cichlid )
• Anguilla anguilla ( European eel, 109 genes )
• Anoplopoma fimbria ( sablefish )
• Astyanax mexicanus ( Mexican tetra or blind cave fish )
• Austrofundulus_limnaeus ( bony fishes )
• Boleophthalmus pectinirostris ( great blue-spotted mudskipper, 122 genes )
• Callorhinchus milii ( Elephant shark )
• Clupea harengus ( Atlantic herring )
• Cottus rhenanus ( small benthic Rhine sculpin )
• Ctenopharyngodon idella ( grass carp )
• Cynoglossus semilaevis ( Tonguefish )
• Cyprinodon ( Cyprinodon_nevadensis+variega )
• Cyprinus carpio ( mirror carp, common carp )
• Danio rerio ( Zebrafish, additional variant )
• Danio rerio ( Zebrafish, leopard danio )
• Dicentrarchus labrax ( European seabass )
• Esox lucius ( northern pike )
• Fundulus heteroclitus ( Mummichog , killifish )
• Gasterosteus aculeatus ( Three-spined stickleback )
• Haplochromis burtoni ( Burton's mouthbrooder )
• Larimichthys crocea ( large yellow croaker )
• Lepisosteus oculatus ( spotted gar )
• Neolamprologus brichardi ( Lyretail cichlid, Princess of Burundi )
• Notothenia coriiceps ( yellowbelly rockcod, black rockcod )
• Oncorhynchus mykiss ( rainbow trout )
• Oreochromis niloticus ( African cichlid )
• Oryzias Latipes ( Japanese rice fish )
• Petromyzon marinus ( Sea lamprey )
• Takifugu rubripes ( Torafugu )
• Tetraodon nigroviridis ( Spotted green pufferfish )

Protista

• Acanthamoeba castellanii ( amoebae )
• Babesia ( generic, piroplasms )
• Chlamydomonas ( Chlamydomonas generic)
• Dictyostelium discoideum ( cellular slime molds )
• Entamoeba histolytica ( anaerobic parasitic protozoan )
• Giardia lamblia ( diplomonads, Giardia lamblia )
• Guillardia theta ( cryptomonads )
• Leishmania major ( kinetoplastids )
• Paulinella chromatophora ( cercozoans, freshwater amoeboids )
• Plasmodium falciparum ( malaria parasite )
• Toxoplasma gondii ( apicomplexans )
• Trypanosoma brucei ( kinetoplastids )