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Total 352 organisms in 17 groups

Ascomycetes

  • Acremonium chrysogenum ( Cephalosporium acremonium )
  • Ajellomyces ( generic, Ajellomyces capsulatus+dermatitidis )
  • Alternaria brassicicola ( plant pathogen )
  • Amorphotheca resinae ( creosote fungus )
  • Arthrobotrys oligospora ( mitosporic predatory fungi )
  • Arthroderma ( generic, causal agent of dermatophytosis )
  • Ascocoryne sarcoides ( jelly drops, purple jellydisc )
  • Aureobasidium ( generic, black, yeast-like fungus )
  • Baudoinia compniacensis ( Angels' Share fungus )
  • Beauveria ( generic, asexually-reproducing fungi )
  • Biatriospora mackinnonii ( ascomycetes )
  • Bipolaris ( generic )
  • Blastomyces ( generic, causal agent of blastomycosis )
  • Blumeria graminis ( grass mildew )
  • Botryosphaeria obtusa ( plant pathogen that causes Frogeye leaf spot, Black rot and cankers )
  • Botryotinia fuckeliana ( plant pathogen, Botrytis cinerea )
  • Botrytis ( generic, plant pathogen )
  • Brettanomyces bruxellensis( yeast )
  • Byssochlamys spectabilis( anamorph Paecilomyces variotii )
  • Calycina herbarum ( Hymenoscyphus herbarum )
  • Candida albicans ( diploid yeast, human pathogen )
  • Candida glabrata ( haploid yeast, human pathogen )
  • Capronia( Capronia coronata+epimyces+semiimmersa )
  • Ceratocystis platani ( plant pathogen )
  • Cercospora canescens ( causes olive leaf spot )
  • Chaetomium ( Chaetomium_globosum+thermophilum )
  • Chrysoporthe ( generic, Chrysoporthe austroafricana+cubensis+deuterocubensis )
  • Ciborinia camelliae ( causal agent of Camellia flower blight )
  • Cladophialophora ( Cladophialophora bantiana+carrionii+immunda+psammophila+yegresii )
  • Cladosporium sphaerospermum ( mold )
  • Claviceps purpurea ( ergot fungus )
  • Clavispora lusitaniae ( yeast )
  • Coccidioides immitis ( pathogenic fungus )
  • Cochliobolus ( generic, Cochliobolus carbonum+heterostrophus+ miyabeanus+ sativus+ victoriae )
  • Colletotrichum ( Colletotrichum fioriniae+gloeosporioides+graminicola+higginsianum+orbiculare+sublineola )
  • Coniosporium apollinis ( rock-inhabiting microcolonial fungi )
  • Cordyceps militaris ( entomopathogenic fungi )
  • Corynespora cassiicola ( plant pathogen )
  • Cryomyces antarcticus ( ascomycetes )
  • Curvularia ( generic, Curvularia lunata+ papendorfii )
  • Cyberlindnera ( generic, Cyberlindnera fabianii+ jadinii )
  • Diaporthe ampelina ( Phomopsis viticola, Phomopsis ampelina, Fusicoccum viticolum )
  • Diplodia seriata ( cause of bot canker of grapevine )
  • Emericella ( Aspergillus ) nidulans ( filamentous fungi )
  • Emmonsia ( generic, Emmonsia crescens+parva )
  • Erysiphe necator ( grape powdery mildew )
  • Eutypa armeniacae ( causal agent of Eutypa dieback )
  • Exophiala ( Exophiala_aquamarina+dermatitidis+mesophila+oligosperma+sideris+spinifera+xenobiotica )
  • Fonsecaea pedrosoi ( major causative agent of chromoblastomycosis )
  • Fusarium ( generic, Fusarium graminearum+ fujikuroi+ oxysporum+ solani+ verticillioides )
  • Fusarium graminearum ( generic, haploid homothallic ascomycete )
  • Gaeumannomyces graminis ( plant pathogen )
  • Glarea lozoyensis ( ascomycetes )
  • Grosmannia clavigera ( blue stain fungus )
  • Hirsutella minnesotensis ( pathogen of the soybean cyst nematode )
  • Histoplasma ( generic, dimorphic fungi )
  • Histoplasma capsulatum ( cause the histoplasmosis )
  • Kazachstania ( yeast, generic )
  • Kluyveromyces lactis ( yeast )
  • Komagataella pastoris ( methylotrophic yeast, Pichia pastoris )
  • Lachancea ( generic )
  • Leptosphaeria ( generic, fungi )
  • Leptosphaeria maculans ( blackleg of rapeseed fungus )
  • Macrophomina phaseolina ( plant pathogen )
  • Magnaporthe ( generic, fungi )
  • Marssonina brunnea ( plant pathogen )
  • Metarhizium ( generic )
  • Microsporum gypseum ( soil-associated dermatophyte, Arthroderma gypseum )
  • Millerozyma farinosa ( yeast )
  • Myceliophthora thermophila ( Sporotrichum thermophilum, Chrysosporium thermophilum )
  • Naumovozyma ( generic, Naumovozyma_castellii+dairenensis )
  • Neofusicoccum parvum ( Fusicoccum parvum )
  • Neosartorya fischeri ( Aspergillus fischeri )
  • Neurospora crassa ( red bread mold )
  • Oidiodendron maius ( ascomycetes )
  • Ophiocordyceps sinensis ( Cordyceps sinensis )
  • Ophiostoma piceae ( pine saprophyte )
  • Paracoccidioides ( generic, Paracoccidioides_brasiliensis+lutzii )
  • Penicillium chrysogenum ( fungus, Penicillium notatum )
  • Pestalotiopsis fici ( plant pathogen )
  • Pyrenophora ( generic, plant pathogen )
  • Saccharomyces cerevisiae ( baker's yeast )
  • Scheffersomyces stipitis ( yeast, Pichia stipitis )
  • Schizosaccharomyces pombe ( fission yeast )
  • Sclerotinia sclerotiorum ( plant pathogen )
  • Stagonospora nodorum ( pathogen of wheat )
  • Uncinocarpus reesii ( non-pathogenic fungus )
  • Yarrowia lipolytica ( yeast )
  • Zygosaccharomyces rouxii ( osmoresistant yeast )

Aves (Birds)

  • Acanthisitta chloris ( Rifleman )
  • Anas platyrhynchos ( Mallard )
  • Anser cygnoides ( Swan goose, Chinese goose )
  • Aptenodytes forsteri ( Emperor penguin )
  • Apteryx australis ( Brown kiwi )
  • Aquila chrysaetos ( Golden eagle )
  • Buceros rhinoceros ( Rhinoceros hornbill )
  • Calidris pugnax ( Ruff, Philomachus pugnax )
  • Calypte anna ( Anna's hummingbird )
  • Caprimulgus carolinensis ( Chuck-will's-widow )
  • Cariama cristata ( Red-legged seriema )
  • Chaetura pelagica ( Chimney swift )
  • Charadrius vociferus ( Killdeer )
  • Chicken (Aves generic)
  • Chlamydotis macqueenii ( MacQueen's bustard )
  • Colius striatus ( Speckled mousebird )
  • Columba livia ( Rock pigeon )
  • Corvus brachyrhynchos ( American crow )
  • Cuculus canorus ( Common cuckoo )
  • Egretta garzetta ( Little egret )
  • Falco cherrug ( Saker falcon )
  • Ficedula albicollis ( collared flycatcher )
  • Geospiza fortis ( medium ground finch )
  • Haliaeetus leucocephalus ( bald eagle )
  • Manacus vitellinus ( golden-collared manakin )
  • Meleagris gallopavo ( Wild Turkey )

Basidiomycetes

  • Agaricus ( generic, champignons )
  • Amanita muscaria ( fly agaric, fly amanita )
  • Auricularia subglabra ( basidiomycetes )
  • Botryobasidium_botryosum ( botryosum )
  • Ceriporiopsis subvermispora B ( basidiomycetes )
  • Coniophora puteana ( cellar fungus, which causes a rot in wood )
  • Coprinus ( generic )
  • Cronartium ( generic, Cronartium comandrae+ quercuum+ ribicola 206 genes only )
  • Cryptococcus ( generic, encapsulated yeast )
  • Cryptococcus gattii ( encapsulated yeast )
  • Cryptococcus neoformans ( encapsulated yeast )
  • Cylindrobasidium torrendii ( corticioid fungi )
  • Fibroporia radiculosa ( Antrodia radiculosa )
  • Fistulina hepatica ( beefsteak polypore or ox tongue )
  • Fomitiporia mediterranea ( plant pathogen )
  • Fomitopsis pinicola ( pine bolete, pinewood king bolete)
  • Galerina marginata ( poisonous fungus )
  • Gloeophyllum trabeum ( plant fungal pathogen )
  • Gymnopus luxurians ( fungus )
  • Hebeloma cylindrosporum ( mushroom-forming fungus )
  • Heterobasidion irregulare ( tree root rotting pathogenic fungus )
  • Hydnomerulius pinastri ( spiny dry rot fungus )
  • Hypholoma sublateritium ( brick cap )
  • Jaapia argillacea ( fungus )
  • Laccaria ( generic )
  • Melampsora larici-populina ( poplar leaf rust fungus )
  • Microbotryum violaceum ( anther smut fungus, Ustilago violacea )
  • Mixia osmundae ( Taphrina osmundae )
  • Moniliophthora ( generic, Moniliophthora perniciosa+roreri )
  • Paxillus ( generic, Paxillus_involutus+rubicundulus )
  • Phanerochaete chrysosporium ( New version USTILAGO+WREST )
  • Puccinia ( rusts )
  • Ustilago ( smuts )

Dicot plants

  • Amborella trichopoda ( rare understory shrub )
  • Arabidopsis thaliana( rockcress, thale cress )
  • Brassica rapa ( turnip, field mustard )
  • Camelina sativa ( false flax, gold-of-pleasure )
  • Cicer arietinum ( chickpea )
  • Citrus sinensis ( sweet orange )
  • Cucumis melo ( muskmelon )
  • Dicot plants, Arabidopsis ( generic )
  • Erythranthe guttata ( spotted monkey flower )
  • Eucalyptis grandis ( rose gum )
  • Fragaria vesca ( wild strawberry )
  • Glycine max ( soybean )
  • Gossypium raimondii ( diploid cotton )
  • Hevea ( generic )
  • Ipomoea batatas ( sweet potato )
  • Jatropha curcas ( Barbados nut, purging nut, physic nut, JCL )
  • Malus domestica ( apple )
  • Medicago ( generic )
  • Medicago truncatula ( barrel medic, leguminous )
  • Nelumbo nucifera ( sacred lotus, padma, Indian lotus )
  • Nicotiana ( generic )
  • Populus trichocarpa ( poplar, black cottonwood )
  • Solanum lycopersicum ( generic, tomato )
  • Sunflower ( generic )
  • Vitis vinifera ( wine grape )

Hexapoda (Insecta)

  • Acromyrmex echinatior ( Panamanian leaf-cutter ant )
  • Acyrthosiphon pisum ( pea aphid )
  • Aedes aegypti ( yellow fever mosquito )
  • Anopheles gambiae ( malaria mosquito )
  • Apis (generic, apis )
  • Apis dorsata ( giant honey bee )
  • Apis florea ( red dwarf honey bee )
  • Athalia rosae ( turnip sawfly )
  • Atta cephalotes ( leaf cutting ant )
  • Bactrocera cucurbitae ( melon fly )
  • Bactrocera dorsalis ( oriental fruit fly )
  • Bombus impatiens ( common eastern bumble bee )
  • Bombus terrestris ( buff-tailed bumble bee )
  • Bombyx mori ( silkworm )
  • Cerataphis brasiliensis ( Palm Aphid )
  • Culex ( generic, culex )
  • Danaus plexippus ( butterfly )
  • Drosophila (generic, fruit fly)
  • Heliconius melpomene ( postman butterfly )
  • Nasonia vitripennis ( parasitoid wasp )
  • Pediculus humanus ( human louse )
  • Tribolium castaneum ( red flour beetle )

Mammalia

  • Acinonyx jubatus ( Cheetah )
  • Ailuropoda melanoleuca ( Giant panda )
  • Aotus nancymaae ( Ma's night monkey, Aotus nancymai )
  • Apodemus sylvaticus ( wood mouse )
  • Balaena mysticetus ( bowhead whale )
  • Balaenoptera acutorostrata ( common minke whale or northern minke whale )
  • Bison bison ( American bison )
  • Bos mutus ( wild yak )
  • Bos taurus ( cattle )
  • Bubalus bubalis ( Water buffalo )
  • Callitrix jacchus ( White-tufted-ear marmoset )
  • Camelus dromedarius ( Bactrian camel )
  • Canis lupus ( gray wolf )
  • Capra hircus ( Goat )
  • Ceratotherium simum ( White rhinoceros )
  • Cerocebus atys ( Sooty mangabey )
  • Chinchilla lanigera ( Long-tailed chinchilla )
  • Chlorocebus sabaeus ( Green monkey )
  • Choloepus hoffmanni ( Hoffmann's two-fingered sloth )
  • Chrysochloris asiatica ( Cape golden mole )
  • Colobus angolensis ( Angolan colobus )
  • Condylura cristata ( Star-nosed mole )
  • Cricetulus griseus ( Chinese hamster )
  • Dasypus novemcinctus ( Nine-banded armadillo )
  • Dipodomys ordii ( Kangaroo rat )
  • Elephantulus edwardii ( Cape long-eared elephant shrew )
  • Eptesicus fuscus ( Big brown bat )
  • Erinaceus europaeus ( hedgehog )
  • Felis catus ( domestic cat )
  • Fox ( Fox generic )
  • Fukomys damarensis ( Damaraland mole-rat, Damara mole rat, Damaraland blesmol )
  • Galeopterus variegatus ( Sunda flying lemur, Malayan flying lemur, Sunda Colugo or Malayan colugo )
  • Gorilla gorilla ( Western gorilla )
  • Heterocephalus glaber ( naked mole-rat, sand puppy, desert mole rat )
  • Human ( Homo sapiens )
  • Ictidomys tridecemlineatus ( thirteen-lined ground squirrel,striped gopher )
  • Jaculus jaculus ( lesser Egyptian jerboa )
  • Leptonychotes weddellii ( Weddell seal )
  • Lipotes vexillifer ( baiji, Chinese river dolphin )
  • Lynx pardinus ( Iberian lynx )
  • Macaca mulatta (Rhesus monkey)
  • Mandrillus leucophaeus ( drill )
  • Manis pentadactyla ( Chinese pangolin )
  • Marmota marmota ( alpine marmot )
  • Monodelphis domestica ( gray short-tailed opossum )
  • Mouse (generic)
  • Mustela putorius ( European Polecat )
  • Myotis lucifugus ( Little brown bat )
  • Nomascus leucogenys ( gibbon )
  • Ochotona princeps ( American pika )
  • Ornithorhynchus anatinus ( Platypus )
  • Oryctolagus cuniculus ( European rabbit )
  • Otolemur_garnettii ( Northern greater galago, small-eared galago )
  • Pan troglodytes ( Common chimpanzee )
  • Procavia capensis ( Rock hyrax )
  • Pteropus vampyrus ( Large flying fox )
  • Sarcophilus harrisii ( Tasmanian devil )
  • Sorex araneus ( Common shrew )
  • Vicugna pacos ( alpaca )

Monocot plants

  • Aegilops tauschii ( Tausch's goatgrass )
  • Brachypodium distachyon ( purple false brome )
  • Hordeum vulgare ( barley )
  • Leersia perrieri ( cutgrasses )
  • Monocot plants ( generic, Corn, Rice, Wheat, Barley )
  • Musa acuminata ( dwarf banana )
  • Oryza sativa Indica Group(long-grained rice )
  • Setaria italica Foxtail millet)
  • Sorghum bicolor (Sorghum)
  • Triticum aestivum ( wheat )
  • Zea mays ( sweetcorn )

Nematoda

  • Brugia malayi ( parasitic nematode )
  • Caenorhabditis brenneri
  • Caenorhabditis elegans ( C.elegans )
  • Pristionchus pacificus ( nematode )
  • Trichinella spiralis ( parasitic nematode )

Oomycetes

  • Albugo laibachii ( plant pathogen )
  • Aphanomyces ( water moulds )
  • Hyaloperonospora arabidopsidis ( plant pathogen )
  • Phytophthora ( plant pathogen )
  • Pythium ultimum ( plant pathogen )

Other animalia

  • Amphimedon queenslandica ( sponge )
  • Aplysia californica ( california sea hare )
  • Mnemiopsis leidyi ( warty comb jelly )
  • Nematostella vectensis ( sea anemone )
  • Schistosoma mansoni ( parasitic trematode )
  • Trichoplax adhaerens (placozoans)

Other arthropoda

  • Daphnia pulex ( water flea )
  • Ixodes scapularis ( deer tick )
  • Strigamia maritima ( centipede )

Other deuterostomia

  • Branchiostoma floridae ( lancelet )
  • Strongylocentrotus purpuratus ( sea urchin )
  • Strongylocentrotus purpuratus (additional variant) ( sea urchin )

Other fungi

  • Absidia idahoensis ( pathogenic fungus )
  • Allomyces macrogynus ( blastocladiomycetes )
  • Apophysomyces ( generic, Apophysomyces elegans+trapeziformis )
  • Batrachochytrium ( amphibian chytrid fungus )
  • Cokeromyces recurvatus ( pathogenic fungus )
  • Lichtheimia corymbifera ( Absidia corymbifera, pathogenic fungus )
  • Mortierella verticillata ( soil fungi )
  • Mucor ( generic, Mucor ambiguus+circinelloides )
  • Nosema ( generic, Nosema_apis+bombycis+ceranae, microsporidians )
  • Parasitella parasitica ( Parasitella simplex )
  • Rhizopus oryzae ( opportunistic human pathogen )
  • Rhodosporidium toruloides ( oleaginous yeast )

Other plants

  • Aureococcus anophagefferens ( heterokont alga )
  • Ostreococcus lucimarinus ( green algae )
  • Phaeodactylum tricornutum ( Diatoms )
  • Physcomitrella patens ( Bryophyte, mosses )
  • Selaginella moellendorffii ( Lycophyte, Club-mosses )

Other vertebrata

  • Alligator mississippiensis ( American alligator )
  • Alligator sinensis ( Chinese alligator )
  • Anolis carolinensis ( Green anole, Carolina anole )
  • Chelonia mydas ( Green sea turtle )
  • Chrysemus picta ( Painted turtle )
  • Xenopus ( generic, frog )

Pisces (fishes)

  • Amphilophus citrinellus ( Midas cichlid, red devil cichlid )
  • Anguilla anguilla ( European eel, 109 genes )
  • Anoplopoma fimbria ( sablefish )
  • Astyanax mexicanus ( Mexican tetra or blind cave fish )
  • Austrofundulus_limnaeus ( bony fishes )
  • Boleophthalmus pectinirostris ( great blue-spotted mudskipper, 122 genes )
  • Callorhinchus milii ( Elephant shark )
  • Clupea harengus ( Atlantic herring )
  • Cottus rhenanus ( small benthic Rhine sculpin )
  • Ctenopharyngodon idella ( grass carp )
  • Cynoglossus semilaevis ( Tonguefish )
  • Cyprinodon ( Cyprinodon_nevadensis+variega )
  • Cyprinus carpio ( mirror carp, common carp )
  • Danio rerio ( Zebrafish, additional variant )
  • Danio rerio ( Zebrafish, leopard danio )
  • Dicentrarchus labrax ( European seabass )
  • Esox lucius ( northern pike )
  • Fundulus heteroclitus ( Mummichog , killifish )
  • Gasterosteus aculeatus ( Three-spined stickleback )
  • Haplochromis burtoni ( Burton's mouthbrooder )
  • Larimichthys crocea ( large yellow croaker )
  • Lepisosteus oculatus ( spotted gar )
  • Neolamprologus brichardi ( Lyretail cichlid, Princess of Burundi )
  • Notothenia coriiceps ( yellowbelly rockcod, black rockcod )
  • Oncorhynchus mykiss ( rainbow trout )
  • Oreochromis niloticus ( African cichlid )
  • Oryzias Latipes ( Japanese rice fish )
  • Petromyzon marinus ( Sea lamprey )
  • Takifugu rubripes ( Torafugu )
  • Tetraodon nigroviridis ( Spotted green pufferfish )

Protista

  • Acanthamoeba castellanii ( amoebae )
  • Babesia ( generic, piroplasms )
  • Chlamydomonas ( Chlamydomonas generic)
  • Dictyostelium discoideum ( cellular slime molds )
  • Entamoeba histolytica ( anaerobic parasitic protozoan )
  • Giardia lamblia ( diplomonads, Giardia lamblia )
  • Guillardia theta ( cryptomonads )
  • Leishmania major ( kinetoplastids )
  • Paulinella chromatophora ( cercozoans, freshwater amoeboids )
  • Plasmodium falciparum ( malaria parasite )
  • Toxoplasma gondii ( apicomplexans )
  • Trypanosoma brucei ( kinetoplastids )
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