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Gene finding
Gene finding with similarity
Gene finding in Bacteria
Gene finding in Viruses
Next Generation
Gene search
Gene explorer
Promoter
FPROM  Human promoter prediction
PATTERN  Pattern search
TSSP  Plants Pol II promoter region and start of transcription
TSSG  Human PolII promoter region and start of transcription
TSSW  Human PolII promoter region and start of transcription (ONLY for academic usage)
Nsite-PL  Recognition of PLANT regulatory motifs, RegsitePL DB
NsiteM-PL  Recognition of PLANT regulatory motifs, RegsitePL DB
Nsite  Recognition of Regulatory motifs with statistics
NsiteM  Recognition of Conserved Regulatory motifs
NsiteH  Search for functional motifs conserved in orthologs
POLYAH  Recognition of polyadenilation region
BPROM  Promoter finding in Bacteria
PromH (G)  Find promoter with orthologs
PromH (W)  Find promoter with orthologs (academic usage)
CpGFinder  Find GC-islands
ScanWM-P  Search for weight matrix patterns of plant regulatory sequences
Motif Explorer  Motif and promoter visualization
Protein location
RNA structure
Protein structure
3d-explorer
SeqMan
Multiple alignment
Analysis of expression data
Plant promoter database
Search and map repeats
Extracting known SNPs

 

 

NSITE-PL

Reference: Solovyev VV, Shahmuradov IA, Salamov AA. (2010) Identification of promoter regions and regulatory sites. Methods Mol Biol. 674, 57-83.

NSITE-PL / Recognition of PLANT Regulatory motifs with statistics (RegsitePL DB)

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Last modification date: 27 Nov 2013

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