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Gene finding
Gene finding with similarity
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SeqMan
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Analysis of expression data
Plant promoter database
Search and map repeats
Extracting known SNPs

 

 

NsiteH

NsiteH / search for functional motifs conserved in a pair of orthologous sequences (for RE Sets derived from ooTFD, Regsite AN DB and RegsitePL DB)

Example

Paste your nucleotide sequence in here:

Alternatively, load a local file with sequence in Fasta format:

Local file name:

Paste second sequence in here:

Alternatively, load a local file with sequence in Fasta format:

Local file name:

Select database:
RegsiteAN DB (human/animals)
RegsitePL DB (plants)
ooTFD DB (human and animals)

Advanced options [see example of value in (..)]:

change minimal similarity level in percents
change maximal expected by chance number of motifs
Write query sequences to output file.
Positions of motifs found are given in relation to right boundaries of upstream sequences, if query sequences include upstream sequences of genes by themselves or as part of gene sequence. If this option disabled, positions of motifs found are given as in query sequences.
Mean expected number (Real, ≥ 0.)
Statistical siginicance level (Real, > 0. , ≤ 100.)
Some variation of distance between two blocks of RE is allowed.
Put here other options, if any.

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Last modification date: 27 Nov 2013

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