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Gene finding
Gene finding with similarity
Gene finding in Bacteria
Gene finding in Viruses
Next Generation
Gene search
Gene explorer
Protein location
RNA structure
Protein structure
Multiple alignment
Analysis of expression data
Plant promoter database
Search and map repeats
Extracting known SNPs




Reference: Solovyev VV, Shahmuradov IA, Salamov AA. (2010) Identification of promoter regions and regulatory sites. Methods Mol Biol. 674, 57-83.

Nsite / Recognition of Regulatory motifs (for RE Sets derived from ooTFD, RegsiteAN DB and RegsitePL DB)

Paste nucleotide sequence here:

Alternatively, load a local file with sequence in Fasta format:
Local file name:

 Search for user provided sites (See format):

RegsiteAN DB (human/animals)
RegsitePL DB (plants)
ooTFD DB (human and animals)

Advanced options [see example of value in (..)]:

change minimal similarity level in percents
change maximal expected by chance number of motifs
Write query sequences to output file.
Positions of motifs found are given in relation to right boundaries of upstream sequences, if query sequences include upstream sequences of genes by themselves or as part of gene sequence. If this option disabled, positions of motifs found are given as in query sequences.
Mean expected number (real, ≥ 0.)
Statistical significance level (real, > 0. , ≤ 100.)
Allow some variation of distance between two blocks of RE.
Put here other options, if any.

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Last modification date: 12 Dec 2013

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