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Gene finding
Gene finding with similarity
Gene finding in Bacteria
Gene finding in Viruses
Next Generation
Gene search
Gene explorer
Protein location
RNA structure
Protein structure
Multiple alignment
Analysis of expression data
Plant promoter database
Search and map repeats
Extracting known SNPs




Example: full Protein Mol. Dyn. + Simulated Annealing

Please upload input file in PDB format:

Main options for the program:

MD for defined LOOPs onlyLOOPs file:
( LOOPs file format description)
RUN Simulated Annealing MD protocol Protocol file (optional, default one will be used if not specified):
(protocol file format description)

Solvation energy/force is ON
add Hydrogens if Input PDBfile has no H

Initial temperature is  K
Thermal bath temperature is  K
Maximal number of MD steps is
Frequency to write SNAPshots for MD trajectory


 Do not exclude technical details from the program's output.

[Help] [Show advanced options] [Program's page]
[Example: full Protein Mol. Dyn.]
[Example: loop Mol. Dyn.]
[Example: loop Mol. Dyn. + Simulated Annealing]

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Last modification date: 24 Jul 2007

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