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Gene finding
Gene finding with similarity
Gene finding in Bacteria
Gene finding in Viruses
Next Generation
Gene search
Gene explorer
Promoter
Protein location
RNA structure
Protein structure
3d-explorer
SeqMan
Multiple alignment
Analysis of expression data
Plant promoter database
Search and map repeats
Extracting known SNPs

 

 

MAP REPEAT

Map REP / map repeat on small genomes

Select genome input

Load a local file with genome (Up to 5 files):

User genome title:

Upload file:

Select repeat DB input

Load a local file with repeat DB (Up to 5 files):

User DB title:

Upload file:

Use preload genome:
  Aeropyrum pernix: 
  Archaeoglobus fulgidus: 
  E. coli: 
  Methanobacterium thermoautotrophicum: 
  Methanocaldococcus jannaschii: 
  Pyrococcus abyssi: 
  Pyrococcus horikoshii: 

Use preload DB:
  Aeropyrum pernix: 
  Archaeoglobus fulgidus: 
  E. coli: 
  Methanobacterium thermoautotrophicum: 
  Methanocaldococcus jannaschii: 
  Pyrococcus abyssi: 
  Pyrococcus horikoshii: 

Select output:
  Repeat positions 
  Masked sequence 
       Sequence - lower case 
       Sequence - upper case 
       Repeats - mask by symbol:  

Minimum repeat homology (>=50.0)
Minimal repeat length (>= 10)
Minimum sum block repeat length in alignment (>= 10)
Minimum repeat number for base entry (>=1)

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Last modification date: 24 Jul 2007

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