SeqMan v.2  Manipulations with sequences
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SeqMan  Manipulations with sequences.
This version is obsolete and will be removed soon.
BestPal_empirical  Calculates best palindrome for given rna sequence, and also a set suboptimal palindromes (sorted by energy)
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[Example]
BestPal_helix  Calculates best palindrome for given rna sequence with restrictions
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[Example]
BestPal_window  Calculates best palindrome for given rna sequence scanning the sequence with a window (for long sequences)
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[Example]
SMAP  mapping oligonucleotides to genome
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[Example]
OLIGO_MAP  Program for fast mapping a big set of oligos to chromosome sequences
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[Example]
OLIGS  Compute statistics of oligonucleotide occurrences in a set of sequences
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[Example]
OLIGSR  Compute statistics of oligonucleotide redundant occurrences in a set of sequences
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[Example]
OLIGS2  Compute more frequently oligonucleotides in 1 set and less frequently oligonucleotides in 2 set.
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[Example]
