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Gene finding
Gene finding with similarity
Gene finding in Bacteria
Gene finding in Viruses
Next Generation
Gene search
Gene explorer
Promoter
Protein location
RNA structure
Protein structure
3d-explorer
SeqMan
Multiple alignment
Analysis of expression data
Plant promoter database
Search and map repeats
Extracting known SNPs

 

 

Manipulations with sequences

SeqMan v.2 - Manipulations with sequences [Help]

SeqMan - Manipulations with sequences. This version is obsolete and will be removed soon.

BestPal_empirical - Calculates best palindrome for given rna sequence, and also a set suboptimal palindromes (sorted by energy) [Help] [Example]

BestPal_helix - Calculates best palindrome for given rna sequence with restrictions [Help] [Example]

BestPal_window - Calculates best palindrome for given rna sequence scanning the sequence with a window (for long sequences) [Help] [Example]

SMAP - mapping oligonucleotides to genome [Help] [Example]

OLIGO_MAP - Program for fast mapping a big set of oligos to chromosome sequences [Help] [Example]

OLIGS - Compute statistics of oligonucleotide occurrences in a set of sequences [Help] [Example]

OLIGSR - Compute statistics of oligonucleotide redundant occurrences in a set of sequences [Help] [Example]

OLIGS2 - Compute more frequently oligonucleotides in 1 set and less frequently oligonucleotides in 2 set. [Help] [Example]


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