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Gene finding
Gene finding with similarity
Gene finding in Bacteria
Gene finding in Viruses
Next Generation
Gene search
Gene explorer
Protein location
RNA structure
Protein structure
Multiple alignment
Analysis of expression data
Plant promoter database
Search and map repeats
Extracting known SNPs



Sequences alignment, Alignment with genome, Alignment genomes.

The programs usage in Scientific publications

FMAP - instantly maps your sequence to human genome draft - click this link to use FMAP. [Example]

SCAN2 - program for aligning two multimegabyte-size nucleotid sequences [Help] [Example]

SCAN2a - program for aligning two multimegabyte-size aminoacid sequences [Help] [Example]

DBSCAN - database homology search program similar to BLAST, but handling multimegabyte-size sequences. [Example]

EST_map - Mapping your mRNA/EST to Chromosome sequence of Human genome [Help] [Example]

PROT_map - mapping of a set of proteins on genome [Help] [Example]

SMAP - mapping oligonucleotides to genome [Help] [Example]

Genomes Match - comparison of 2 genomic or chromosomes (with viewer) [Example]

Genomes Match 2 - comparison of 2 genomic or chromosomes (without viewer) [Example]

You can also BLAST search of your sequence through human/mouse/Drosophila genes/proteins predicted by Softberry from genome sequences using complex script FGENESH++ that combines FGENESH, FGENESH+ and EST_MAP programs.

BLAST - Comparing your nucleotide sequence with Fgenesh++ set of mRNA/ORF

To view human genome in our GenomeSequence Explorer, click here - you can also map your sequence by FMAP in that graphical interface. To view mouse genome, click here.

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