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Gene finding
Gene finding with similarity
Gene finding in Bacteria
Gene finding in Viruses
Next Generation
Gene search
Gene explorer
Promoter
Protein location
RNA structure
Protein structure
3d-explorer
SeqMan
Multiple alignment
Analysis of expression data
Plant promoter database
Search and map repeats
Extracting known SNPs

 

 

RNA structures

Examples of use of programs in scientific publications

FoldRNA - RNA secondary structure prediction through energy minimization [Help] [Example]

BestPal_empirical - Calculates best palindrome for given rna sequence, and also a set suboptimal palindromes (sorted by energy) [Help] [Example]

BestPal_helix - Calculates best palindrome for given rna sequence with restrictions [Help] [Example]

BestPal_window - Calculates best palindrome for given rna sequence scanning the sequence with a window (for long sequences) [Help] [Example]

FindTerm - Finding Terminators in bacterial genomes [Help] [Example]

findMiRNA - programm for search MiRNA [Help] [Example]

TargetMiRna - Search target for MiRNA [Help] [Example]


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