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Gene finding
Gene finding with similarity
Gene finding in Bacteria
Gene finding in Viruses
Next Generation
Gene search
Gene explorer
Protein location
RNA structure
Protein structure
Multiple alignment
Analysis of expression data
Plant promoter database
Search and map repeats
Extracting known SNPs



Protein secondary structure

The programs usage in Scientific publications

PSSFinder - prediction of protein secondary structure using Markov chains. [Example]

SSPRED - program of secondary structure prediction. [Help]

SSPAL - Nearest-neighbor with local alignments SS prediction [Help]

NNSSP - Nearest-neighbor SS prediction [Help]

SSP - Segment-oriented SS prediction [Help]

SSENVID - Protein secondary structure and environment assignment from atomic coordinates [Help]

PDISORDER - Protein Disorder Prediction [Help]

GETATOMS - Optimization of replaced side chain groups by simulated annealing algorithm [Help]

3d-comp - Structure alignment to superposition [Help]

AbIni3D - Ab inition folding [Help]

MDynSB - Program MDynSB is designed to perform multiple tasks with protein structure [Help]

HMod3DMM - Energy minimization program by molecular mechanic [Help]

CYS_REC - Prediction of SS-bonding States of Cysteines in Protein Sequences [Help]

3D-Match - Comparing 3D structures of two proteins [Help]

3D-MatchDB - Comparing 3D structure with 3D-Database [Help]

3DmodelFit - program for comparison protein 3D model and its original structure [Help]

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