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Gene finding
Gene finding with similarity
Gene finding in Bacteria
Gene finding in Viruses
Next Generation
Gene search
Gene explorer
Promoter
Protein location
RNA structure
Protein structure
3d-explorer
SeqMan
Multiple alignment
Analysis of expression data
Plant promoter database
Search and map repeats
Extracting known SNPs

 

 

Search for promoters/functional motifs

The programs usage in Scientific publications

List of Plant Regsite database factors used in TSSP and Nsite-PL programs

FPROM / Human promoter prediction [Help] [Example]

PATTERN / pattern search [Help] [Example]

TSSP / Prediction of PLANT Promoters (Using RegSite Plant DB, Softberry Inc.) [Help] [Example]

TSSG / Recognition of human PolII promoter region and start of transcription [Help] [Example]

TSSW / Recognition of human PolII promoter region and start of transcription (Transfac DB, Biobase GmbH, ONLY for academic use) [Help] [Example]

Nsite-PL / Recognition of PLANT Regulatory motifs with statistics (RegsitePL DB) [Help] [Example]

NsiteM-PL / Recognition of PLANT Regulatory motifs conserved in several sequences (RegsitePL DB) [Help] [Example]

Nsite / Recognition of Regulatory motifs (for RE Sets derived from ooTFD, RegsiteAN DB and RegsitePL DB) [Help] [Example]

NsiteM / Recognition of Conserved Regulatory motifs (for RE Sets derived from ooTFD, RegsiteAN DB and RegsitePL DB) [Help] [Example]

NsiteH / Search for functional motifs conserved in a pair of orthologous sequences (for RE Sets derived from ooTFD, Regsite AN DB and RegsitePL DB) [Help] [Example]

POLYAH / Recognition of 3'-end cleavage and polyadenilation region [Help] [Example]

BPROM / Prediction of bacterial promoters [Help] [Example]

PromH(G) / Promoter prediction using ortologous sequences in eukaryotic genomes [Help] [Example]

PromH(W) / Promoter prediction using ortologous sequences in eukaryotic genomes (only for academic usage) [Help] [Example]

CpGFinder / GC-islands finding [Help] [Example]

ScanWM-P / Search for weight matrix patterns of plant regulatory sequences [Help] [Example]

Motif Explorer / Motif and promoter visualization


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