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Gene finding
Gene finding with similarity
Gene finding in Bacteria
Gene finding in Viruses
Next Generation
Gene search
Gene explorer
Protein location
RNA structure
Protein structure
Multiple alignment
Analysis of expression data
Plant promoter database
Search and map repeats
Extracting known SNPs




Optimization of replaced side chain groups by simulated annealing algorithm


Enter PDB Identifier or file in PDB format: Chain:
Enter alignment file (from screen or from file): Alignment format:

SA Temperature: Add H-atoms at the end of optimization
SA Maximal number of steps: Process loops and insertions
Use visualization  (Java3d Installation page). Note. To run applet viewer you need to include linux1.softberry.com in the list of your browser (see instruction).

[Help] [Program's page]
[Example with visualization]

[3D-Explorer help (English)] [3D-Explorer help (Russian)]


You need to JRE and Java3d has been installed on your computer for the normal work of 3d-Explorer.

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Last modification date: 19 Mar 2015

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