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GETATOMS

Optimization of replaced side chain groups by simulated annealing algorithm

Enter PDB Identifier or file in PDB format: Chain:
Enter alignment file (from screen or from file): Alignment format:

SA Temperature: Add H-atoms at the end of optimization
SA Maximal number of steps: Process loops and insertions
Use visualization  (Java3d Installation page). Note. To run applet viewer you need to include linux1.softberry.com in the list of your browser (see instruction).

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[Example]
[Example with visualization]

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[Getpdb]

You need to JRE and Java3d has been installed on your computer for the normal work of 3d-Explorer.

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Last modification date: 19 Mar 2015

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