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Gene finding
Gene finding with similarity
Gene finding in Bacteria
FGENESB  Gene finding in Bacteria
Visualization of FGENESB  Visualization of FGENESB annotation using CGView
BPROM  Prediction of bacterial promoters
AbSplit  Separating archea and bacterial genomic sequences
FindTerm  Finding Terminators in bacterial genomes
Bacterial GenomeSequence Explorer  Visualization of Bacterial genomes information
Annotations  all bacteria
General scheme  of bacterial genome annotation
Human Microbiome  gene prediction
Softberry Microbiome Annotation  Database
Gene finding in Viruses
Next Generation
Gene search
Gene explorer
Promoter
Protein location
RNA structure
Protein structure
3d-explorer
SeqMan
Multiple alignment
Analysis of expression data
Plant promoter database
Search and map repeats
Extracting known SNPs

 

 

FindTerm

Reference: V. Solovyev, A Salamov (2011) Automatic Annotation of Microbial Genomes and Metagenomic Sequences. In Metagenomics and its Applications in Agriculture, Biomedicine and Environmental Studies (Ed. R.W. Li), Nova Science Publishers, p. 61-78

FindTerm - Finding Terminators in bacterial genomes

Paste nucleotide sequence here:

Alternatively, load a local file with sequence:

Local file name:

All putative terminators (one best signal by default) 
Energy threshold value 

Graphical output of Computed structure is provided in Java viewer or postscript:
Run Java viewer (Java viewer help) Note. To run applet viewer you need to include linux1.softberry.com in the list of your browser (see instruction).
Generate Postscript file

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[Example (run Java viewer)]

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Last modification date: 19 Mar 2015

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