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Gene finding
Gene finding with similarity
Gene finding in Bacteria
Gene finding in Viruses
Next Generation
Gene search
Gene explorer
Promoter
Protein location
RNA structure
Protein structure
3d-explorer
SeqMan
Multiple alignment
Analysis of expression data
Plant promoter database
Search and map repeats
Extracting known SNPs

 

 

FGENESH

HMM-based gene structure prediction (multiple genes, both chains)

Paste nucleotide sequence here:

Alternatively, load a local file with sequence in Fasta format:

Local file name:

Organism:Bos taurus Chicken Fish Frog (Xenopodinae) Human Mouse

Anopheles gambiae Culex Drosophila Honey Bee Tribolium (red flour beetle)

Brugia malayi (parasitic nematode) C.elegans Sea urchin

Diatom Plasmodium falciparum Phytophthora

Dicot plants (Arabidopsis) Medicago (legume plant) Monocot plants (Corn, Rice, Wheat, Barley) Nicotiana tabacum Tomato Vitis vinifera Hevea

Chlamydomonas (single celled green algae)

Alternaria Aspergillus Batrachochytrium Botrytis Coccidioides immitis Coprinopsis cinerea Cryptococcus neoformans Fusarium graminearum Histoplazma (fungus) Leptosphaeria Magnaporthe Neurospora crassa Paracocci Phanerochaete chrysosporium (white rot) Penicillium Puccinia Pyrenophora Rhizopus_oryzae Schizosaccharomyces pombe Sclerotinia sclerotiorum Stagnospora nodorum Uncinocarpus reesii Ustilago

[Help] [Show advanced options
[Example: Homo sapiens genomic beta globin region (HBB@) on chromosome 11]
[Example: Search in -chain]

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Most gene finding parameters presented here were trained by Softberry for its own use and distribution, using proprietary and publicly available data. Some of the parameters were created for our academic customers, including Broad Institute/MIT, Washington University, University of Minnesota and The Institute for Genomic Research (TIGR).


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Last modification date: 24 Jul 2007

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