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CpG Finder help

The program is intended to search for CpG islands in sequences.

Program options:
Min length of island to find - searching CpG islands with a length (bp) not less than specified in the field.
Min percent G and C - searching CpG islands with a composition not less than specified in the field.
Min CpG number - the minimal number of CpG dinucleotides in the island.
Min gc_ratio=P(CpG)/(expected)P(CpG) - the minimal ratio of the observed to expected frequency of CpG dinucleotide in the island.
Extend island if its lengths less then required - extending the CpG island, if its length is shorter than required.

Output example:

Search parameters:  len: 200   %GC: 50.0   CpG number: 0   P(CpG)/exp: 0.600   extend island: no   A: 21   B: -2
Locus name:  9003..16734 note="CpG_island (%GC=65.4, o/e=0.70, #CpGs=577)"
Locus reference:   expected P(CpG): 0.086   length: 25020
    20.1%(a)  29.9%(c)  28.6%(g)  21.4%(t)   0.0%(other)

				FOUND 4 ISLANDS
  #     start      end   chain   CpG    %CG    CG/GC    P(CpG)/exp     P(CpG)    len
  1      9192    10496     +     161   73.0    0.847   0.927( 1.44)    0.123    1305	
  2     11147    11939     +      87   69.2    0.821   0.917( 1.28)    0.110     793	
  3     15957    16374     +      57   79.4    0.781   0.871( 1.60)    0.137     418	
  4     14689    15091     +      49   74.2    0.817   0.887( 1.42)    0.122     403	
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