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Gene finding
Gene finding with similarity
Gene finding in Bacteria
Gene finding in Viruses
Next Generation
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Protein location
RNA structure
Protein structure
3d-explorer
SeqMan
Multiple alignment
Analysis of expression data
Plant promoter database
Search and map repeats
Extracting known SNPs

 

 

Comparsion of genomic and protein sequences

You can BLAST search of your sequence through human/mouse/rat genes/proteins predicted by Softberry from genome sequences using complex script FGENESH++ that combines FGENESH, FGENESH+ and ESTS_MAP programs.

To view human genome in our Genome Explorer, click here - you can also map your sequence by FMAP in that graphical interface. To view mouse genome, click here.

BLAST (NCBI program) / Comparing your protein sequence with Fgenesh++ set of proteins

Paste your protein sequence in here:

Alternatively, load a local file with sequence in Fasta format:
Local file name:

Choose organism:

   Drosoph AA
   Ecoli AA
   PDB AA
   Swissprot AA

[Help] [Show advanced options
[Example]


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Last modification date: 24 Jul 2007

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