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Gene finding
Gene finding with similarity
Gene finding in Bacteria
Gene finding in Viruses
Next Generation
Gene search
Gene explorer
Promoter
Protein location
RNA structure
Protein structure
3d-explorer
SeqMan
SeqMan2  Manipulations with sequences
BestPal_empirical  Calculates best palindrome for given rna sequence, and also a set suboptimal palindromes (sorted by energy)
BestPal_helix  Calculates best palindrome for given rna sequence with restrictions
BestPal_window  Calculates best palindrome for given rna sequence scanning the sequence with a window (for long sequences)
SMAP  Mapping oligonucleotides to genome
OLIGO_MAP  New tool for mapping oligonucleotides to genome
OLIGS  Compute statistics of oligonucleotides
OLIGSR  Compute statistics of oligonucleotides redundant
OLIGS2  Compute frequently oligonucleotides
Multiple alignment
Analysis of expression data
Plant promoter database
Search and map repeats
Extracting known SNPs

 

 

BESTPAL window

BestPal window - Calculates best palindrome for given rna sequence scanning the sequence with a window (for long sequences)

Paste nucleotide sequence here:

Alternatively, load a local file with sequence:

Local file name:

Window Length: 

Graphical output of Computed structure is provided in Java viewer or postscript:
Run Java viewer (Java viewer help) Note. To run applet viewer you need to include linux1.softberry.com in the list of your browser (see instruction).
Generate Postscript file

[Help] 
[Example1]
[Example2]

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Last modification date: 19 Mar 2015

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