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Gene finding
Gene finding with similarity
Gene finding in Bacteria
Gene finding in Viruses
Next Generation
Gene search
Gene explorer
Protein location
RNA structure
Protein structure
Multiple alignment
Analysis of expression data
Plant promoter database
Search and map repeats
Extracting known SNPs




BestPal helix - Calculates best palindrome for given rna sequence with restrictions

Example: Search for RNA secondary structure (Homo sapiens GTF2H4)

Searching best "linear" rna secondary structure in Homo sapiens general transcription factor IIH, polypeptide 4, 52kDa (GTF2H4), mRNA.

Paste nucleotide sequence here:

Alternatively, load a local file with sequence:

Local file name:

Minimal spiral size:  
Maximum distance: 

Graphical output of Computed structure is provided in Java viewer or postscript:
Run Java viewer (Java viewer help) Note. To run applet viewer you need to include linux1.softberry.com in the list of your browser (see instruction).
Generate Postscript file

[Help] [Program's page]
[Example: Search for RNA secondary structure (fragment of Mus musculus Qtrtd1)]
[Example: Search for RNA secondary structure (Homo sapiens GTF2H4), run Java viewer, generate postscript]

Return to page with other programs of group: RNA structure

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Last modification date: 19 Mar 2015

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