Example: Search for RNA secondary structure (fragment of Mus musculus Qtrtd1)

Searching best "linear" rna secondary structure in fragment of Mus musculus queuine tRNA-ribosyltransferase domain containing 1 (Qtrtd1), mRNA.

Paste nucleotide sequence here:
tgcggcggagaccgtggtttagtgggccaagggttctacgagtcggaacacgtgttatctcttgcgaagagtttaagggtcctgagggtgcggagttgtgttatcaaccgaacacagaagaatcccaaatgatgaagctgagtctcatcaaagtcgttaatggctgtcgtctaggaaaaatacaaaacctgggcaaagcaggggactgcacggtggacattccgggctgtcttctctacaccaggactggctctgccccacacctgacacatcagacgctgcgtaacatccacggggtcccaggcatagcccagctcacactctcatccctagcagaacatcatgaagtcttggcagaatataagaaaggagttggaagctttataggcatgccggaatcactcttctattgttccctgcacgatccagtcacccccggcccagctggttatgtaacaagtaaggtcctccagaaaagtgtgatcattggagtgattgagggtggagatgtgatggaagagaggttgaggtcagcacgagagacagccaagcgacccgtcgggggcttcctgctggacggctttcaaggggatccagcagtcacagaaaccagactgcacttgctgtcatcagtcactgcagagctgccagaggacaaaccaaggctcatctgcggtgtcagccggccagacgaagtgctagagtgcatcgaaaggggagtggacttgtttgagagttttttcccatatcaagt

Alternatively, load a local file with sequence:

Local file name:

Minimal spiral size:  
Maximum distance: 

Graphical output of Computed structure is provided in Java viewer or postscript:
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