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Gene finding
Gene finding with similarity
Gene finding in Bacteria
Gene finding in Viruses
Next Generation
Gene search
Gene explorer
Promoter
Protein location
RNA structure
Protein structure
3d-explorer
SeqMan
Multiple alignment
Analysis of expression data
Plant promoter database
Search and map repeats
Extracting known SNPs

 

 


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Run ReadsMap, Assembling, Genome alignments (synteny), Fgenesb_Annotator and Transomics pipelines on line.

CASE STUDIES:

Academia
Industry


Recent News

December 24, 2012. Softberry provided download about 100 software applications for free usage in research academic project. The download WEB page can be viewed here.

October 28, 2011. Softberry announces 11th release of RegSite database of plant regulatory elements. A list of its 2,252 entries representing 2,286 motifs can be viewed here.

>All news...

Software SummarySoftware manualsApplied in Publications
Automatic genome   annotation
Eukaryotic: animal, plant, fungi
Bacterial and bacterial
  community DNA
Visualization of annotations
Genome Explorer
Visualization of Bacterial
   genome comparison
   and annotation

 
Sequence comparison
Alignment of genomic sequences
Multiple alignment and tree
   construction
Fast search in genomes
ESTs clustering and
   visualization
Analysis of Gene Regulation
Promoter prediction for
   animal and plant genes
Search for functional
   motifs and conserved motifs
Regsite database of regulatory
   motifs

 
Protein 3D-structure analysis and modeling
Assignment of secondary structure and accesibility
Alignments of 3D structures
Restoring coordinates
   of side chains
Prediction of secondary
   structures
Fold recognition
Homology modeling
Analysis of Expression data
Clustering of
  co-expressed genes
Finding disease/tissue/
  condition specific gene sets
Analysis of protein functions
Search for functional motifs
Prediction of protein
   localization in cell
  Identification of
   SS-bonded Cys
Prediction of protein
   disordered regions
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